miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 113667 0.66 0.867791
Target:  5'- cCGcGAGGGuGCgCGCgGGUCGGacguuGGCgCCg -3'
miRNA:   3'- -GCuUUCCCuCG-GCG-CUAGCCg----CCG-GG- -5'
9101 5' -60 NC_002512.2 + 138 0.66 0.867791
Target:  5'- aCGccGGGGAGCCG-GG-CGG-GGCgCCg -3'
miRNA:   3'- -GCuuUCCCUCGGCgCUaGCCgCCG-GG- -5'
9101 5' -60 NC_002512.2 + 158975 0.66 0.867791
Target:  5'- gCGGuucGGcGGCCacgGCGGggcggaggCGGCGGCCCc -3'
miRNA:   3'- -GCUuu-CCcUCGG---CGCUa-------GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 225494 0.66 0.867791
Target:  5'- gCGAucuacGGGGCCGCcg-CGGgGGUCCc -3'
miRNA:   3'- -GCUuuc--CCUCGGCGcuaGCCgCCGGG- -5'
9101 5' -60 NC_002512.2 + 122592 0.66 0.867092
Target:  5'- cCGAucGGGGAGaucagguUCGUc-UCGGCGGCCUc -3'
miRNA:   3'- -GCUu-UCCCUC-------GGCGcuAGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 95244 0.66 0.866391
Target:  5'- cCGGAGGGGgcguccggagGGCCGCGcggcuccugaaCGGCGGggucggguuCCCg -3'
miRNA:   3'- -GCUUUCCC----------UCGGCGCua---------GCCGCC---------GGG- -5'
9101 5' -60 NC_002512.2 + 130780 0.66 0.86072
Target:  5'- gGAccacGAGGaGGGCCGcCGAcgcgcagcacgCGGUGGCCg -3'
miRNA:   3'- gCU----UUCC-CUCGGC-GCUa----------GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 171732 0.66 0.86072
Target:  5'- aCGAucGGGAcGUCGaGcUCGG-GGCCCu -3'
miRNA:   3'- -GCUuuCCCU-CGGCgCuAGCCgCCGGG- -5'
9101 5' -60 NC_002512.2 + 164442 0.66 0.86072
Target:  5'- ----cGGGaAGCCGC--UCGGC-GCCCu -3'
miRNA:   3'- gcuuuCCC-UCGGCGcuAGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 101891 0.66 0.86072
Target:  5'- gCGAAagcgcGGGGAcGCCGaCGGgggCGGCGuGUUCu -3'
miRNA:   3'- -GCUU-----UCCCU-CGGC-GCUa--GCCGC-CGGG- -5'
9101 5' -60 NC_002512.2 + 90502 0.66 0.86072
Target:  5'- gGGAucGGGGCCGaGGcCGGCGGCg- -3'
miRNA:   3'- gCUUucCCUCGGCgCUaGCCGCCGgg -5'
9101 5' -60 NC_002512.2 + 97367 0.66 0.86072
Target:  5'- -----cGGAGCgGgGAccgCGGCGGCCg -3'
miRNA:   3'- gcuuucCCUCGgCgCUa--GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 75121 0.66 0.860002
Target:  5'- gCGGAcacGGGGAGacgggcaCCGCGAcgccgUCGgacGCGGCCg -3'
miRNA:   3'- -GCUU---UCCCUC-------GGCGCU-----AGC---CGCCGGg -5'
9101 5' -60 NC_002512.2 + 112748 0.66 0.860002
Target:  5'- gCGGAAGGcggaGAGCCGgccguccCGGacaCGGUGGCCUu -3'
miRNA:   3'- -GCUUUCC----CUCGGC-------GCUa--GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 20125 0.66 0.853467
Target:  5'- cCGAAAGacgcGGAG-CGCGA-CGGCuGUCCg -3'
miRNA:   3'- -GCUUUC----CCUCgGCGCUaGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 101724 0.66 0.853467
Target:  5'- gCGGAcGaGAGCCuccgucucccucGCGAggUGGUGGCCCg -3'
miRNA:   3'- -GCUUuCcCUCGG------------CGCUa-GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 142029 0.66 0.853467
Target:  5'- gCGGccGGGGGCCgGCGAcccgccgCGaG-GGCCCg -3'
miRNA:   3'- -GCUuuCCCUCGG-CGCUa------GC-CgCCGGG- -5'
9101 5' -60 NC_002512.2 + 41082 0.66 0.853467
Target:  5'- uGAAguAGcc-GCCGCGAUCGG-GGCCg -3'
miRNA:   3'- gCUU--UCccuCGGCGCUAGCCgCCGGg -5'
9101 5' -60 NC_002512.2 + 91240 0.66 0.853467
Target:  5'- uCGucAGGGAcGCCGCGuaCGGgGagauGCCCg -3'
miRNA:   3'- -GCuuUCCCU-CGGCGCuaGCCgC----CGGG- -5'
9101 5' -60 NC_002512.2 + 51170 0.66 0.853467
Target:  5'- uCGAAAcuGGGccuGGCCaGCaacgCGGCGGCCg -3'
miRNA:   3'- -GCUUU--CCC---UCGG-CGcua-GCCGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.