miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 9748 0.68 0.772245
Target:  5'- uGggGGcggcGGAGCCGgacccgccgcccCGcgUGGCGGCUCa -3'
miRNA:   3'- gCuuUC----CCUCGGC------------GCuaGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 10708 0.66 0.867791
Target:  5'- aGGAAGcGGuAGCCGaCGG-CGGCGaaGUCCu -3'
miRNA:   3'- gCUUUC-CC-UCGGC-GCUaGCCGC--CGGG- -5'
9101 5' -60 NC_002512.2 + 10828 0.69 0.680097
Target:  5'- uCGAAgcccgcGGGGAGCCcCGcgCcGCGGCCg -3'
miRNA:   3'- -GCUU------UCCCUCGGcGCuaGcCGCCGGg -5'
9101 5' -60 NC_002512.2 + 11442 0.74 0.430778
Target:  5'- ---cGGGGAcGCCGCGGaCGGgGGCCg -3'
miRNA:   3'- gcuuUCCCU-CGGCGCUaGCCgCCGGg -5'
9101 5' -60 NC_002512.2 + 11567 0.69 0.717791
Target:  5'- aCGAGggcuacGGGGAGCa-CGAgCGGCcGCCCa -3'
miRNA:   3'- -GCUU------UCCCUCGgcGCUaGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 13453 0.71 0.613063
Target:  5'- gGAGAGGGcGGCgGCGAgccUGGCGuCCCc -3'
miRNA:   3'- gCUUUCCC-UCGgCGCUa--GCCGCcGGG- -5'
9101 5' -60 NC_002512.2 + 15239 0.8 0.207121
Target:  5'- cCGGGAGGaGAGaCUGCGA--GGCGGCCCg -3'
miRNA:   3'- -GCUUUCC-CUC-GGCGCUagCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 15629 0.69 0.689591
Target:  5'- gCGAcAGcGGAacuccucgGCCGCGggCGGCGaGCCg -3'
miRNA:   3'- -GCUuUC-CCU--------CGGCGCuaGCCGC-CGGg -5'
9101 5' -60 NC_002512.2 + 16274 0.71 0.603485
Target:  5'- aGAGucAGGGAccggaCGCGA-CGGCGGCCg -3'
miRNA:   3'- gCUU--UCCCUcg---GCGCUaGCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 17039 0.67 0.814672
Target:  5'- uCGGAGGGGAcggacggcGcCCGCGcccaacccCGGCGGCgCg -3'
miRNA:   3'- -GCUUUCCCU--------C-GGCGCua------GCCGCCGgG- -5'
9101 5' -60 NC_002512.2 + 17446 0.68 0.754453
Target:  5'- ----cGGcGGUCGCGGcCGGcCGGCCCg -3'
miRNA:   3'- gcuuuCCcUCGGCGCUaGCC-GCCGGG- -5'
9101 5' -60 NC_002512.2 + 17884 0.71 0.593926
Target:  5'- ----cGGGGGaCGUGAUaggcggCGGCGGCCCc -3'
miRNA:   3'- gcuuuCCCUCgGCGCUA------GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 18078 0.7 0.670569
Target:  5'- uCGAAauAGGuGcGCCGCGG-CGGgaCGGCCCc -3'
miRNA:   3'- -GCUU--UCC-CuCGGCGCUaGCC--GCCGGG- -5'
9101 5' -60 NC_002512.2 + 18680 0.72 0.53728
Target:  5'- gGAGAGGaaGAGCuCGUGggCGGCGGgcacCCCg -3'
miRNA:   3'- gCUUUCC--CUCG-GCGCuaGCCGCC----GGG- -5'
9101 5' -60 NC_002512.2 + 20125 0.66 0.853467
Target:  5'- cCGAAAGacgcGGAG-CGCGA-CGGCuGUCCg -3'
miRNA:   3'- -GCUUUC----CCUCgGCGCUaGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 21065 0.68 0.780979
Target:  5'- gCGuGAGGGcGCa-CGggCGGCGGUCCc -3'
miRNA:   3'- -GCuUUCCCuCGgcGCuaGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 21455 0.72 0.54661
Target:  5'- uCGAucGGGGGCCGgcgcCGGgagCGGC-GCCCg -3'
miRNA:   3'- -GCUuuCCCUCGGC----GCUa--GCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 22345 0.7 0.669614
Target:  5'- gCGAGGGaGGAGUCGCag-CGggaggacGCGGCCCc -3'
miRNA:   3'- -GCUUUC-CCUCGGCGcuaGC-------CGCCGGG- -5'
9101 5' -60 NC_002512.2 + 29750 0.67 0.830672
Target:  5'- gCGcGAGGGGGCCcgGCGAUCGacgcgaCGGCg- -3'
miRNA:   3'- -GCuUUCCCUCGG--CGCUAGCc-----GCCGgg -5'
9101 5' -60 NC_002512.2 + 30412 0.66 0.867791
Target:  5'- aCGGAcGGGGAcGCgGgCG-UCGucGCGGCCCu -3'
miRNA:   3'- -GCUU-UCCCU-CGgC-GCuAGC--CGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.