Results 21 - 40 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9101 | 5' | -60 | NC_002512.2 | + | 229677 | 0.66 | 0.874676 |
Target: 5'- gGAGAGaGAGCggCGCGA-CGGgGGgCCa -3' miRNA: 3'- gCUUUCcCUCG--GCGCUaGCCgCCgGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 274 | 0.66 | 0.874676 |
Target: 5'- gGAGAGaGAGCggCGCGA-CGGgGGgCCa -3' miRNA: 3'- gCUUUCcCUCG--GCGCUaGCCgCCgGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 116598 | 0.66 | 0.874676 |
Target: 5'- gCGAGGgcGGGAGgcCCGCcg-CGGCuGCCCc -3' miRNA: 3'- -GCUUU--CCCUC--GGCGcuaGCCGcCGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 225494 | 0.66 | 0.867791 |
Target: 5'- gCGAucuacGGGGCCGCcg-CGGgGGUCCc -3' miRNA: 3'- -GCUuuc--CCUCGGCGcuaGCCgCCGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 95196 | 0.66 | 0.874676 |
Target: 5'- gCGAGAGGacGuCCGCGGUCG-CGcGUCCg -3' miRNA: 3'- -GCUUUCCcuC-GGCGCUAGCcGC-CGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 10708 | 0.66 | 0.867791 |
Target: 5'- aGGAAGcGGuAGCCGaCGG-CGGCGaaGUCCu -3' miRNA: 3'- gCUUUC-CC-UCGGC-GCUaGCCGC--CGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 82115 | 0.66 | 0.874676 |
Target: 5'- ------cGAGCCGCGAgUCGGgaCGGCCg -3' miRNA: 3'- gcuuuccCUCGGCGCU-AGCC--GCCGGg -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 99889 | 0.66 | 0.870568 |
Target: 5'- cCGGGA-GGAGgCGCGGcccgucgagggcgcCGGgGGCCCg -3' miRNA: 3'- -GCUUUcCCUCgGCGCUa-------------GCCgCCGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 150302 | 0.66 | 0.874676 |
Target: 5'- gCGAAgaGGcGGAGgaGCGAgacCGGCGGCg- -3' miRNA: 3'- -GCUU--UC-CCUCggCGCUa--GCCGCCGgg -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 5239 | 0.66 | 0.837668 |
Target: 5'- uCGAAcucGGGcgcguaggccgaGGCCGCGG-CGGCGaccccgaGCCCg -3' miRNA: 3'- -GCUUu--CCC------------UCGGCGCUaGCCGC-------CGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 30412 | 0.66 | 0.867791 |
Target: 5'- aCGGAcGGGGAcGCgGgCG-UCGucGCGGCCCu -3' miRNA: 3'- -GCUU-UCCCU-CGgC-GCuAGC--CGCCGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 51170 | 0.66 | 0.853467 |
Target: 5'- uCGAAAcuGGGccuGGCCaGCaacgCGGCGGCCg -3' miRNA: 3'- -GCUUU--CCC---UCGG-CGcua-GCCGCCGGg -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 75339 | 0.66 | 0.846037 |
Target: 5'- uCGAGGcGGGcgcuCCG-GAUUGGuCGGCCCg -3' miRNA: 3'- -GCUUU-CCCuc--GGCgCUAGCC-GCCGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 72781 | 0.66 | 0.838437 |
Target: 5'- cCGGGAGGGAcgucGCCGgGA-CGG--GCCCg -3' miRNA: 3'- -GCUUUCCCU----CGGCgCUaGCCgcCGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 98721 | 0.66 | 0.838437 |
Target: 5'- gCGAGAacGGGcucGGCCGCuuccucUCGGCcGCCCu -3' miRNA: 3'- -GCUUU--CCC---UCGGCGcu----AGCCGcCGGG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 6406 | 0.66 | 0.838437 |
Target: 5'- aGGGAGGcGGCgGCGGcgcuggggaaGGCGGCCg -3' miRNA: 3'- gCUUUCCcUCGgCGCUag--------CCGCCGGg -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 118075 | 0.66 | 0.846037 |
Target: 5'- gCGGAGGGGgcGGCUccgGCGc-CGGCGGCgaCCg -3' miRNA: 3'- -GCUUUCCC--UCGG---CGCuaGCCGCCG--GG- -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 41082 | 0.66 | 0.853467 |
Target: 5'- uGAAguAGcc-GCCGCGAUCGG-GGCCg -3' miRNA: 3'- gCUU--UCccuCGGCGCUAGCCgCCGGg -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 97367 | 0.66 | 0.86072 |
Target: 5'- -----cGGAGCgGgGAccgCGGCGGCCg -3' miRNA: 3'- gcuuucCCUCGgCgCUa--GCCGCCGGg -5' |
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9101 | 5' | -60 | NC_002512.2 | + | 173610 | 0.66 | 0.867791 |
Target: 5'- uCGAGuagcGGGAgcgccuccGCCGCGG-CGGCGaacCCCg -3' miRNA: 3'- -GCUUu---CCCU--------CGGCGCUaGCCGCc--GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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