miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 72781 0.66 0.838437
Target:  5'- cCGGGAGGGAcgucGCCGgGA-CGG--GCCCg -3'
miRNA:   3'- -GCUUUCCCU----CGGCgCUaGCCgcCGGG- -5'
9101 5' -60 NC_002512.2 + 154270 0.66 0.851995
Target:  5'- gCGGAGGGGAGCCGaagcgucagaaaaCGcAUCacgauccgaggguGGCGGaCCg -3'
miRNA:   3'- -GCUUUCCCUCGGC-------------GC-UAG-------------CCGCCgGG- -5'
9101 5' -60 NC_002512.2 + 6406 0.66 0.838437
Target:  5'- aGGGAGGcGGCgGCGGcgcuggggaaGGCGGCCg -3'
miRNA:   3'- gCUUUCCcUCGgCGCUag--------CCGCCGGg -5'
9101 5' -60 NC_002512.2 + 93373 0.66 0.867791
Target:  5'- cCGGGAGGGgaucgGGCCGCag--GGCGcGCCg -3'
miRNA:   3'- -GCUUUCCC-----UCGGCGcuagCCGC-CGGg -5'
9101 5' -60 NC_002512.2 + 20125 0.66 0.853467
Target:  5'- cCGAAAGacgcGGAG-CGCGA-CGGCuGUCCg -3'
miRNA:   3'- -GCUUUC----CCUCgGCGCUaGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 97367 0.66 0.86072
Target:  5'- -----cGGAGCgGgGAccgCGGCGGCCg -3'
miRNA:   3'- gcuuucCCUCGgCgCUa--GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 118075 0.66 0.846037
Target:  5'- gCGGAGGGGgcGGCUccgGCGc-CGGCGGCgaCCg -3'
miRNA:   3'- -GCUUUCCC--UCGG---CGCuaGCCGCCG--GG- -5'
9101 5' -60 NC_002512.2 + 95244 0.66 0.866391
Target:  5'- cCGGAGGGGgcguccggagGGCCGCGcggcuccugaaCGGCGGggucggguuCCCg -3'
miRNA:   3'- -GCUUUCCC----------UCGGCGCua---------GCCGCC---------GGG- -5'
9101 5' -60 NC_002512.2 + 101724 0.66 0.853467
Target:  5'- gCGGAcGaGAGCCuccgucucccucGCGAggUGGUGGCCCg -3'
miRNA:   3'- -GCUUuCcCUCGG------------CGCUa-GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 75339 0.66 0.846037
Target:  5'- uCGAGGcGGGcgcuCCG-GAUUGGuCGGCCCg -3'
miRNA:   3'- -GCUUU-CCCuc--GGCgCUAGCC-GCCGGG- -5'
9101 5' -60 NC_002512.2 + 51170 0.66 0.853467
Target:  5'- uCGAAAcuGGGccuGGCCaGCaacgCGGCGGCCg -3'
miRNA:   3'- -GCUUU--CCC---UCGG-CGcua-GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 91240 0.66 0.853467
Target:  5'- uCGucAGGGAcGCCGCGuaCGGgGagauGCCCg -3'
miRNA:   3'- -GCuuUCCCU-CGGCGCuaGCCgC----CGGG- -5'
9101 5' -60 NC_002512.2 + 75121 0.66 0.860002
Target:  5'- gCGGAcacGGGGAGacgggcaCCGCGAcgccgUCGgacGCGGCCg -3'
miRNA:   3'- -GCUU---UCCCUC-------GGCGCU-----AGC---CGCCGGg -5'
9101 5' -60 NC_002512.2 + 10708 0.66 0.867791
Target:  5'- aGGAAGcGGuAGCCGaCGG-CGGCGaaGUCCu -3'
miRNA:   3'- gCUUUC-CC-UCGGC-GCUaGCCGC--CGGG- -5'
9101 5' -60 NC_002512.2 + 120751 0.66 0.846037
Target:  5'- cCGGgcGGcGAGUC-CGAcgugcuggacUCGGCGGCCg -3'
miRNA:   3'- -GCUuuCC-CUCGGcGCU----------AGCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 5239 0.66 0.837668
Target:  5'- uCGAAcucGGGcgcguaggccgaGGCCGCGG-CGGCGaccccgaGCCCg -3'
miRNA:   3'- -GCUUu--CCC------------UCGGCGCUaGCCGC-------CGGG- -5'
9101 5' -60 NC_002512.2 + 98721 0.66 0.838437
Target:  5'- gCGAGAacGGGcucGGCCGCuuccucUCGGCcGCCCu -3'
miRNA:   3'- -GCUUU--CCC---UCGGCGcu----AGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 41082 0.66 0.853467
Target:  5'- uGAAguAGcc-GCCGCGAUCGG-GGCCg -3'
miRNA:   3'- gCUU--UCccuCGGCGCUAGCCgCCGGg -5'
9101 5' -60 NC_002512.2 + 142029 0.66 0.853467
Target:  5'- gCGGccGGGGGCCgGCGAcccgccgCGaG-GGCCCg -3'
miRNA:   3'- -GCUuuCCCUCGG-CGCUa------GC-CgCCGGG- -5'
9101 5' -60 NC_002512.2 + 134233 0.66 0.867791
Target:  5'- aCGAGAGGcuguGCCGgGggCGGCcgagccGCCCc -3'
miRNA:   3'- -GCUUUCCcu--CGGCgCuaGCCGc-----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.