miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 137798 0.72 0.509641
Target:  5'- ----cGGcGGGCCGCGcGUcCGGCGGCCg -3'
miRNA:   3'- gcuuuCC-CUCGGCGC-UA-GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 38923 0.73 0.473761
Target:  5'- cCGGAGGGGccGCCGCGG-CGG-GcGCCCg -3'
miRNA:   3'- -GCUUUCCCu-CGGCGCUaGCCgC-CGGG- -5'
9101 5' -60 NC_002512.2 + 86270 0.73 0.482616
Target:  5'- gGGGAGGGAcgaacGCCGgaGA-CGGgGGCCCg -3'
miRNA:   3'- gCUUUCCCU-----CGGCg-CUaGCCgCCGGG- -5'
9101 5' -60 NC_002512.2 + 130116 0.73 0.488861
Target:  5'- uCGAGAGGGAGCUggaggcccggggugGUGucgCGGCcgcggGGCCCg -3'
miRNA:   3'- -GCUUUCCCUCGG--------------CGCua-GCCG-----CCGGG- -5'
9101 5' -60 NC_002512.2 + 136184 0.73 0.491549
Target:  5'- gCGgcGGGGucGCCGgGAUcgcgucgacgcCGGCGGCCUg -3'
miRNA:   3'- -GCuuUCCCu-CGGCgCUA-----------GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 42571 0.73 0.491549
Target:  5'- aCGGgcGGGcGCCGCGAggcgagCGGCGGggcggaCCCg -3'
miRNA:   3'- -GCUuuCCCuCGGCGCUa-----GCCGCC------GGG- -5'
9101 5' -60 NC_002512.2 + 80801 0.73 0.500559
Target:  5'- aGGAGGaGGAGCgCGCGcgcgccucggcGUCGGCggaggGGCCCc -3'
miRNA:   3'- gCUUUC-CCUCG-GCGC-----------UAGCCG-----CCGGG- -5'
9101 5' -60 NC_002512.2 + 103355 0.73 0.504184
Target:  5'- aCGAGuccGGGGCCGCGGUCGGgucguccgaccagaGGCUCg -3'
miRNA:   3'- -GCUUuc-CCUCGGCGCUAGCCg-------------CCGGG- -5'
9101 5' -60 NC_002512.2 + 57001 0.72 0.509641
Target:  5'- cCGu--GGGcGGCCG-GGUCGGCGGUCUg -3'
miRNA:   3'- -GCuuuCCC-UCGGCgCUAGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 81942 0.73 0.473761
Target:  5'- gCGAGGGcggaGGGGCCgGCGcgCGGUGaGCCCc -3'
miRNA:   3'- -GCUUUC----CCUCGG-CGCuaGCCGC-CGGG- -5'
9101 5' -60 NC_002512.2 + 35910 0.73 0.464988
Target:  5'- gGAGAGcgcggucaGGAGCCGC---CGGCGGCCUc -3'
miRNA:   3'- gCUUUC--------CCUCGGCGcuaGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 122010 0.73 0.456301
Target:  5'- cCGGAGGGGccggaGGCgGCgGAUCGGCGcucgcgcacGCCCg -3'
miRNA:   3'- -GCUUUCCC-----UCGgCG-CUAGCCGC---------CGGG- -5'
9101 5' -60 NC_002512.2 + 15239 0.8 0.207121
Target:  5'- cCGGGAGGaGAGaCUGCGA--GGCGGCCCg -3'
miRNA:   3'- -GCUUUCC-CUC-GGCGCUagCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 107084 0.77 0.271963
Target:  5'- --cGGGGGcGGUCGgguCGGUCGGCGGCCCg -3'
miRNA:   3'- gcuUUCCC-UCGGC---GCUAGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 59829 0.77 0.278046
Target:  5'- -aGAAGGcGGCCGCGGcggCGGCGGCCa -3'
miRNA:   3'- gcUUUCCcUCGGCGCUa--GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 7451 0.75 0.367034
Target:  5'- gCGGcccGGGGGaAGCCGCGGcgCGGCugccGGCCCc -3'
miRNA:   3'- -GCU---UUCCC-UCGGCGCUa-GCCG----CCGGG- -5'
9101 5' -60 NC_002512.2 + 108590 0.74 0.406112
Target:  5'- ---cGGGGGGCCcCGGggagCGGCGGCCg -3'
miRNA:   3'- gcuuUCCCUCGGcGCUa---GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 102204 0.74 0.422458
Target:  5'- aGAAGcGGGAgaucGCCGCGGcCGgaGCGGCCCu -3'
miRNA:   3'- gCUUU-CCCU----CGGCGCUaGC--CGCCGGG- -5'
9101 5' -60 NC_002512.2 + 11442 0.74 0.430778
Target:  5'- ---cGGGGAcGCCGCGGaCGGgGGCCg -3'
miRNA:   3'- gcuuUCCCU-CGGCGCUaGCCgCCGGg -5'
9101 5' -60 NC_002512.2 + 82371 0.73 0.456301
Target:  5'- gCGGAGGGuGAuGCUGCGGccggCGGUGGCuCCg -3'
miRNA:   3'- -GCUUUCC-CU-CGGCGCUa---GCCGCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.