miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 229677 0.66 0.874676
Target:  5'- gGAGAGaGAGCggCGCGA-CGGgGGgCCa -3'
miRNA:   3'- gCUUUCcCUCG--GCGCUaGCCgCCgGG- -5'
9101 5' -60 NC_002512.2 + 101891 0.66 0.86072
Target:  5'- gCGAAagcgcGGGGAcGCCGaCGGgggCGGCGuGUUCu -3'
miRNA:   3'- -GCUU-----UCCCU-CGGC-GCUa--GCCGC-CGGG- -5'
9101 5' -60 NC_002512.2 + 171732 0.66 0.86072
Target:  5'- aCGAucGGGAcGUCGaGcUCGG-GGCCCu -3'
miRNA:   3'- -GCUuuCCCU-CGGCgCuAGCCgCCGGG- -5'
9101 5' -60 NC_002512.2 + 118578 1.11 0.001764
Target:  5'- uCGAAAGGGAGCCGCGAUCGGCGGCCCu -3'
miRNA:   3'- -GCUUUCCCUCGGCGCUAGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 150302 0.66 0.874676
Target:  5'- gCGAAgaGGcGGAGgaGCGAgacCGGCGGCg- -3'
miRNA:   3'- -GCUU--UC-CCUCggCGCUa--GCCGCCGgg -5'
9101 5' -60 NC_002512.2 + 119548 0.66 0.874676
Target:  5'- aGgcGGGGAGCgGgGAcCgGGCGGaCCg -3'
miRNA:   3'- gCuuUCCCUCGgCgCUaG-CCGCCgGG- -5'
9101 5' -60 NC_002512.2 + 99072 0.66 0.872631
Target:  5'- gGuuGGGGuggcugaggaugaaGGCgGCGAaggUGGCGaGCCCg -3'
miRNA:   3'- gCuuUCCC--------------UCGgCGCUa--GCCGC-CGGG- -5'
9101 5' -60 NC_002512.2 + 157072 0.66 0.867791
Target:  5'- cCGGGguccGGGGucGCCgGCGcccaCGGCGGgCCCg -3'
miRNA:   3'- -GCUU----UCCCu-CGG-CGCua--GCCGCC-GGG- -5'
9101 5' -60 NC_002512.2 + 138 0.66 0.867791
Target:  5'- aCGccGGGGAGCCG-GG-CGG-GGCgCCg -3'
miRNA:   3'- -GCuuUCCCUCGGCgCUaGCCgCCG-GG- -5'
9101 5' -60 NC_002512.2 + 130780 0.66 0.86072
Target:  5'- gGAccacGAGGaGGGCCGcCGAcgcgcagcacgCGGUGGCCg -3'
miRNA:   3'- gCU----UUCC-CUCGGC-GCUa----------GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 158975 0.66 0.867791
Target:  5'- gCGGuucGGcGGCCacgGCGGggcggaggCGGCGGCCCc -3'
miRNA:   3'- -GCUuu-CCcUCGG---CGCUa-------GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 225494 0.66 0.867791
Target:  5'- gCGAucuacGGGGCCGCcg-CGGgGGUCCc -3'
miRNA:   3'- -GCUuuc--CCUCGGCGcuaGCCgCCGGG- -5'
9101 5' -60 NC_002512.2 + 217907 0.66 0.874676
Target:  5'- ------cGAGCgGCGGUacgagaCGGUGGCCCg -3'
miRNA:   3'- gcuuuccCUCGgCGCUA------GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 122592 0.66 0.867092
Target:  5'- cCGAucGGGGAGaucagguUCGUc-UCGGCGGCCUc -3'
miRNA:   3'- -GCUu-UCCCUC-------GGCGcuAGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 82115 0.66 0.874676
Target:  5'- ------cGAGCCGCGAgUCGGgaCGGCCg -3'
miRNA:   3'- gcuuuccCUCGGCGCU-AGCC--GCCGGg -5'
9101 5' -60 NC_002512.2 + 113667 0.66 0.867791
Target:  5'- cCGcGAGGGuGCgCGCgGGUCGGacguuGGCgCCg -3'
miRNA:   3'- -GCuUUCCCuCG-GCG-CUAGCCg----CCG-GG- -5'
9101 5' -60 NC_002512.2 + 164442 0.66 0.86072
Target:  5'- ----cGGGaAGCCGC--UCGGC-GCCCu -3'
miRNA:   3'- gcuuuCCC-UCGGCGcuAGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 90502 0.66 0.86072
Target:  5'- gGGAucGGGGCCGaGGcCGGCGGCg- -3'
miRNA:   3'- gCUUucCCUCGGCgCUaGCCGCCGgg -5'
9101 5' -60 NC_002512.2 + 274 0.66 0.874676
Target:  5'- gGAGAGaGAGCggCGCGA-CGGgGGgCCa -3'
miRNA:   3'- gCUUUCcCUCG--GCGCUaGCCgCCgGG- -5'
9101 5' -60 NC_002512.2 + 210845 0.66 0.873996
Target:  5'- cCGucuGGGGGCUGCuccgcgaGAUCGaguGCGuGCCCu -3'
miRNA:   3'- -GCuuuCCCUCGGCG-------CUAGC---CGC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.