miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 118578 1.11 0.001764
Target:  5'- uCGAAAGGGAGCCGCGAUCGGCGGCCCu -3'
miRNA:   3'- -GCUUUCCCUCGGCGCUAGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 32074 0.8 0.184294
Target:  5'- cCGGcaGGGGGGGUCGcCGAU-GGCGGCCCg -3'
miRNA:   3'- -GCU--UUCCCUCGGC-GCUAgCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 96197 0.8 0.188674
Target:  5'- cCGGGAGGcGGCCGCGAggucggccaCGGCGGCCg -3'
miRNA:   3'- -GCUUUCCcUCGGCGCUa--------GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 193893 0.8 0.197249
Target:  5'- gCGGGAGcGGGucGCCGCGGUCGGCGGaucgcguCCCg -3'
miRNA:   3'- -GCUUUC-CCU--CGGCGCUAGCCGCC-------GGG- -5'
9101 5' -60 NC_002512.2 + 188640 0.8 0.207121
Target:  5'- cCGcAAGGGcGCCgGCGGcggCGGCGGCCCg -3'
miRNA:   3'- -GCuUUCCCuCGG-CGCUa--GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 131667 0.8 0.207121
Target:  5'- gGAGcAGGaGGGCCGCGAgggCGGUGaGCCCg -3'
miRNA:   3'- gCUU-UCC-CUCGGCGCUa--GCCGC-CGGG- -5'
9101 5' -60 NC_002512.2 + 15239 0.8 0.207121
Target:  5'- cCGGGAGGaGAGaCUGCGA--GGCGGCCCg -3'
miRNA:   3'- -GCUUUCC-CUC-GGCGCUagCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 217867 0.79 0.221961
Target:  5'- cCGGcguGGGGAGCgCGUccgaGAUCGGCGGCCg -3'
miRNA:   3'- -GCUu--UCCCUCG-GCG----CUAGCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 116464 0.78 0.26012
Target:  5'- gGGGAcGGGGCgGUGAUccCGGCGGCCCa -3'
miRNA:   3'- gCUUUcCCUCGgCGCUA--GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 221291 0.78 0.26012
Target:  5'- gGggGGGGAgGCCGgGGUCGGCGGg-- -3'
miRNA:   3'- gCuuUCCCU-CGGCgCUAGCCGCCggg -5'
9101 5' -60 NC_002512.2 + 107084 0.77 0.271963
Target:  5'- --cGGGGGcGGUCGgguCGGUCGGCGGCCCg -3'
miRNA:   3'- gcuUUCCC-UCGGC---GCUAGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 59829 0.77 0.278046
Target:  5'- -aGAAGGcGGCCGCGGcggCGGCGGCCa -3'
miRNA:   3'- gcUUUCCcUCGGCGCUa--GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 213675 0.77 0.290535
Target:  5'- gCGGAGGGGAGCCcgGCG-UCGcccGCGGUCCu -3'
miRNA:   3'- -GCUUUCCCUCGG--CGCuAGC---CGCCGGG- -5'
9101 5' -60 NC_002512.2 + 96519 0.77 0.310086
Target:  5'- -cGGAGGGAGCCGCGc-CGGCGGUg- -3'
miRNA:   3'- gcUUUCCCUCGGCGCuaGCCGCCGgg -5'
9101 5' -60 NC_002512.2 + 184649 0.76 0.352145
Target:  5'- gCGAGuccgcGGGcGCCGCGccgaaauccgGUCGGCGGCCg -3'
miRNA:   3'- -GCUUu----CCCuCGGCGC----------UAGCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 211708 0.75 0.359536
Target:  5'- aCGAGgagcgcgccuacGGGGAGCUGUGccUCGGCcuGGCCCg -3'
miRNA:   3'- -GCUU------------UCCCUCGGCGCu-AGCCG--CCGGG- -5'
9101 5' -60 NC_002512.2 + 7451 0.75 0.367034
Target:  5'- gCGGcccGGGGGaAGCCGCGGcgCGGCugccGGCCCc -3'
miRNA:   3'- -GCU---UUCCC-UCGGCGCUa-GCCG----CCGGG- -5'
9101 5' -60 NC_002512.2 + 122218 0.75 0.398089
Target:  5'- aGAAGGGGA-CgGCGA-CGGUGGUCCu -3'
miRNA:   3'- gCUUUCCCUcGgCGCUaGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 108590 0.74 0.406112
Target:  5'- ---cGGGGGGCCcCGGggagCGGCGGCCg -3'
miRNA:   3'- gcuuUCCCUCGGcGCUa---GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 94600 0.74 0.406112
Target:  5'- gCGAAcuGGGGCC-CGAagcaGGCGGCCCa -3'
miRNA:   3'- -GCUUucCCUCGGcGCUag--CCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.