miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 48 0.68 0.754453
Target:  5'- gGggGGGGGGCUuuGCGGcgUCGGUcgcgGGCgCg -3'
miRNA:   3'- gCuuUCCCUCGG--CGCU--AGCCG----CCGgG- -5'
9101 5' -60 NC_002512.2 + 138 0.66 0.867791
Target:  5'- aCGccGGGGAGCCG-GG-CGG-GGCgCCg -3'
miRNA:   3'- -GCuuUCCCUCGGCgCUaGCCgCCG-GG- -5'
9101 5' -60 NC_002512.2 + 212 0.66 0.853467
Target:  5'- gGAGAGGGAGCgGgGAccgaagggcaGGCGGgCg -3'
miRNA:   3'- gCUUUCCCUCGgCgCUag--------CCGCCgGg -5'
9101 5' -60 NC_002512.2 + 274 0.66 0.874676
Target:  5'- gGAGAGaGAGCggCGCGA-CGGgGGgCCa -3'
miRNA:   3'- gCUUUCcCUCG--GCGCUaGCCgCCgGG- -5'
9101 5' -60 NC_002512.2 + 2089 0.68 0.736281
Target:  5'- cCGGgcGGGAGCgGgCGGUaCGGCcgcGGCUCg -3'
miRNA:   3'- -GCUuuCCCUCGgC-GCUA-GCCG---CCGGG- -5'
9101 5' -60 NC_002512.2 + 2305 0.7 0.641847
Target:  5'- uGgcGGGGcucuGCUGCGc-CGGCGGUCCg -3'
miRNA:   3'- gCuuUCCCu---CGGCGCuaGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 3060 0.7 0.661013
Target:  5'- aCGgcGGcGGAcGCgGCGGcggCGGCGGCCa -3'
miRNA:   3'- -GCuuUC-CCU-CGgCGCUa--GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 4440 0.7 0.63129
Target:  5'- cCGgcGGGGuGCCGgGcgcggggGUCGGCgucGGCCCc -3'
miRNA:   3'- -GCuuUCCCuCGGCgC-------UAGCCG---CCGGG- -5'
9101 5' -60 NC_002512.2 + 4642 0.68 0.780979
Target:  5'- gGAGAaGGAGCaCGgGAgCGGaGGCCCc -3'
miRNA:   3'- gCUUUcCCUCG-GCgCUaGCCgCCGGG- -5'
9101 5' -60 NC_002512.2 + 5239 0.66 0.837668
Target:  5'- uCGAAcucGGGcgcguaggccgaGGCCGCGG-CGGCGaccccgaGCCCg -3'
miRNA:   3'- -GCUUu--CCC------------UCGGCGCUaGCCGC-------CGGG- -5'
9101 5' -60 NC_002512.2 + 5824 0.7 0.636089
Target:  5'- gGAGAGGucgcagacgcccgacGAGUCGUcccCGGCGGCCCc -3'
miRNA:   3'- gCUUUCC---------------CUCGGCGcuaGCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 6334 0.68 0.74541
Target:  5'- gCGggGGGaccGGgCGCGGggcCGGCGGgCCg -3'
miRNA:   3'- -GCuuUCCc--UCgGCGCUa--GCCGCCgGG- -5'
9101 5' -60 NC_002512.2 + 6406 0.66 0.838437
Target:  5'- aGGGAGGcGGCgGCGGcgcuggggaaGGCGGCCg -3'
miRNA:   3'- gCUUUCCcUCGgCGCUag--------CCGCCGGg -5'
9101 5' -60 NC_002512.2 + 6690 0.71 0.593926
Target:  5'- ----cGGGAcGCCGUccccGUCgGGCGGCCCg -3'
miRNA:   3'- gcuuuCCCU-CGGCGc---UAG-CCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 7284 0.7 0.655269
Target:  5'- gCGAGGccccGGGGGCCggacaggccuccuccGCGA-CGGCGGgCCg -3'
miRNA:   3'- -GCUUU----CCCUCGG---------------CGCUaGCCGCCgGG- -5'
9101 5' -60 NC_002512.2 + 7367 0.69 0.717791
Target:  5'- gCGAc-GGcGGCCGCGGcgGGCGGCCa -3'
miRNA:   3'- -GCUuuCCcUCGGCGCUagCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 7451 0.75 0.367034
Target:  5'- gCGGcccGGGGGaAGCCGCGGcgCGGCugccGGCCCc -3'
miRNA:   3'- -GCU---UUCCC-UCGGCGCUa-GCCG----CCGGG- -5'
9101 5' -60 NC_002512.2 + 7748 0.71 0.603485
Target:  5'- uCGggGGcGGAGCCGgGG-CGGUagucGGCCg -3'
miRNA:   3'- -GCuuUC-CCUCGGCgCUaGCCG----CCGGg -5'
9101 5' -60 NC_002512.2 + 8436 0.67 0.827522
Target:  5'- cCGGucGGacgaccgcgccccGGCCGCGGUCcgcauGGCGGCCg -3'
miRNA:   3'- -GCUuuCCc------------UCGGCGCUAG-----CCGCCGGg -5'
9101 5' -60 NC_002512.2 + 9478 0.67 0.80145
Target:  5'- aGgcGGGcGGGcCCGCGAgCGGCggguagacgacggccGGCCCc -3'
miRNA:   3'- gCuuUCC-CUC-GGCGCUaGCCG---------------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.