miRNA display CGI


Results 1 - 20 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 229677 0.66 0.874676
Target:  5'- gGAGAGaGAGCggCGCGA-CGGgGGgCCa -3'
miRNA:   3'- gCUUUCcCUCG--GCGCUaGCCgCCgGG- -5'
9101 5' -60 NC_002512.2 + 229615 0.66 0.853467
Target:  5'- gGAGAGGGAGCgGgGAccgaagggcaGGCGGgCg -3'
miRNA:   3'- gCUUUCCCUCGgCgCUag--------CCGCCgGg -5'
9101 5' -60 NC_002512.2 + 229538 0.66 0.846037
Target:  5'- aGAAcgccGGGGAGCCG-GG-CGG-GGCgCCg -3'
miRNA:   3'- gCUU----UCCCUCGGCgCUaGCCgCCG-GG- -5'
9101 5' -60 NC_002512.2 + 229533 0.68 0.780979
Target:  5'- aGAgGAGGGAGaggagGCGGUCGGCGGa-- -3'
miRNA:   3'- gCU-UUCCCUCgg---CGCUAGCCGCCggg -5'
9101 5' -60 NC_002512.2 + 229452 0.68 0.754453
Target:  5'- gGggGGGGGGCUuuGCGGcgUCGGUcgcgGGCgCg -3'
miRNA:   3'- gCuuUCCCUCGG--CGCU--AGCCG----CCGgG- -5'
9101 5' -60 NC_002512.2 + 228979 0.72 0.555992
Target:  5'- aGAGGGGGAGaaGCGGaaccgUGGCGGCg- -3'
miRNA:   3'- gCUUUCCCUCggCGCUa----GCCGCCGgg -5'
9101 5' -60 NC_002512.2 + 227959 0.69 0.717791
Target:  5'- gCGcgGGGGAGCCG-GAgaGGagGGCCCc -3'
miRNA:   3'- -GCuuUCCCUCGGCgCUagCCg-CCGGG- -5'
9101 5' -60 NC_002512.2 + 227615 0.68 0.7634
Target:  5'- cCGGAGGGcGGGCgGCGG-CGGCgaGGUCa -3'
miRNA:   3'- -GCUUUCC-CUCGgCGCUaGCCG--CCGGg -5'
9101 5' -60 NC_002512.2 + 227464 0.68 0.7634
Target:  5'- --cGGGGGAgagGCCGgGggCGGCcGGCCg -3'
miRNA:   3'- gcuUUCCCU---CGGCgCuaGCCG-CCGGg -5'
9101 5' -60 NC_002512.2 + 226718 0.69 0.727072
Target:  5'- gCGAcGGGaGGCCGCGGgcgacgaCGGCGGgaCCg -3'
miRNA:   3'- -GCUuUCCcUCGGCGCUa------GCCGCCg-GG- -5'
9101 5' -60 NC_002512.2 + 226484 0.68 0.772245
Target:  5'- cCGggGcccGGGcgcuccccucGCCGCGGguccugcUGGCGGCCCu -3'
miRNA:   3'- -GCuuU---CCCu---------CGGCGCUa------GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 226438 0.69 0.727072
Target:  5'- gGAuGAGGGGGCgGCGAggaaCGGaaacGCCCg -3'
miRNA:   3'- gCU-UUCCCUCGgCGCUa---GCCgc--CGGG- -5'
9101 5' -60 NC_002512.2 + 226228 0.67 0.79809
Target:  5'- ---cGGGGAGCCggaGCGAUCuuaucgccaccGCGGCCg -3'
miRNA:   3'- gcuuUCCCUCGG---CGCUAGc----------CGCCGGg -5'
9101 5' -60 NC_002512.2 + 225785 0.66 0.837668
Target:  5'- cCGAGGcugcgccGGccGGGCCGCGggCGGCcggguGGCCUg -3'
miRNA:   3'- -GCUUU-------CC--CUCGGCGCuaGCCG-----CCGGG- -5'
9101 5' -60 NC_002512.2 + 225494 0.66 0.867791
Target:  5'- gCGAucuacGGGGCCGCcg-CGGgGGUCCc -3'
miRNA:   3'- -GCUuuc--CCUCGGCGcuaGCCgCCGGG- -5'
9101 5' -60 NC_002512.2 + 224622 0.68 0.780979
Target:  5'- cCGGGcucGGGGucgccGCCGCGGccUCGGCcuacgcGCCCg -3'
miRNA:   3'- -GCUU---UCCCu----CGGCGCU--AGCCGc-----CGGG- -5'
9101 5' -60 NC_002512.2 + 224244 0.72 0.53728
Target:  5'- uGAGcgGGGGAGgCG-GGUCGGC-GCCCg -3'
miRNA:   3'- gCUU--UCCCUCgGCgCUAGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 223773 0.68 0.736281
Target:  5'- gCGAggucGAGGGAccggacgucGCCGgGGacgUCGGCGGCgaCCg -3'
miRNA:   3'- -GCU----UUCCCU---------CGGCgCU---AGCCGCCG--GG- -5'
9101 5' -60 NC_002512.2 + 221618 0.73 0.473761
Target:  5'- gCGAgGAGGGAGCgG-GuccaccCGGCGGCCCu -3'
miRNA:   3'- -GCU-UUCCCUCGgCgCua----GCCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 221291 0.78 0.26012
Target:  5'- gGggGGGGAgGCCGgGGUCGGCGGg-- -3'
miRNA:   3'- gCuuUCCCU-CGGCgCUAGCCGCCggg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.