miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 40208 0.66 0.873464
Target:  5'- cGAgGGCCG-CCGGUACCaguagggccgACGCCgguGUCGg -3'
miRNA:   3'- -CUgCCGGUaGGUCGUGG----------UGCGG---UAGU- -5'
9107 3' -58.1 NC_002512.2 + 135819 0.66 0.893684
Target:  5'- cGACGGUCccguUCCcgccGCGCC-CGUCGUCGc -3'
miRNA:   3'- -CUGCCGGu---AGGu---CGUGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 132520 0.66 0.899377
Target:  5'- -cCGGCCGccgcgguccccgcUCCGcGgGCgGCGCCGUCGg -3'
miRNA:   3'- cuGCCGGU-------------AGGU-CgUGgUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 221709 0.66 0.893684
Target:  5'- -uCGGCC-UCgGGUGCUACGCCGa-- -3'
miRNA:   3'- cuGCCGGuAGgUCGUGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 96096 0.66 0.887154
Target:  5'- cGACcGUCGUCCc-CGCCGcCGCCGUCGu -3'
miRNA:   3'- -CUGcCGGUAGGucGUGGU-GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 3145 0.66 0.893684
Target:  5'- -cCGGCCGgagcCCGGU-CC-CGCCGUCGu -3'
miRNA:   3'- cuGCCGGUa---GGUCGuGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 131755 0.66 0.899999
Target:  5'- gGGCGGCCGcgacgaCCAGCGCCcCGgCAa-- -3'
miRNA:   3'- -CUGCCGGUa-----GGUCGUGGuGCgGUagu -5'
9107 3' -58.1 NC_002512.2 + 134345 0.66 0.887154
Target:  5'- cGCGGCCGagcUCCAGaC-CCGCaCCGUCc -3'
miRNA:   3'- cUGCCGGU---AGGUC-GuGGUGcGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 74503 0.66 0.887154
Target:  5'- cGAUcGCCcgCCGGCGCCGcCGCCc--- -3'
miRNA:   3'- -CUGcCGGuaGGUCGUGGU-GCGGuagu -5'
9107 3' -58.1 NC_002512.2 + 109103 0.66 0.899999
Target:  5'- -gUGGCCGU-CAGCGCCAgGCUgaggGUCu -3'
miRNA:   3'- cuGCCGGUAgGUCGUGGUgCGG----UAGu -5'
9107 3' -58.1 NC_002512.2 + 210840 0.66 0.887154
Target:  5'- cACGGCCGUCUgggGGCugcuCCGCGagAUCGa -3'
miRNA:   3'- cUGCCGGUAGG---UCGu---GGUGCggUAGU- -5'
9107 3' -58.1 NC_002512.2 + 112464 0.66 0.866312
Target:  5'- cACGGCCAgcgUCAGCACCgACuCCAg-- -3'
miRNA:   3'- cUGCCGGUa--GGUCGUGG-UGcGGUagu -5'
9107 3' -58.1 NC_002512.2 + 110630 0.66 0.880412
Target:  5'- --gGGCCAgcuUCC-GCACgUACGUCAUCAc -3'
miRNA:   3'- cugCCGGU---AGGuCGUG-GUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 225467 0.66 0.887154
Target:  5'- -cCGGUCuaCCAGCAgC-CGCCGUCGa -3'
miRNA:   3'- cuGCCGGuaGGUCGUgGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 160141 0.66 0.899999
Target:  5'- -gUGGCgAUCCgGGCGCCGCG-UGUCAa -3'
miRNA:   3'- cuGCCGgUAGG-UCGUGGUGCgGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 126457 0.66 0.893684
Target:  5'- cGGCGGCCG-CCuuguuCGCCGuCGUCGUCGc -3'
miRNA:   3'- -CUGCCGGUaGGuc---GUGGU-GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 70956 0.66 0.873464
Target:  5'- --aGGCCG-CCGGCGCCccCGCCGa-- -3'
miRNA:   3'- cugCCGGUaGGUCGUGGu-GCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 10547 0.66 0.880412
Target:  5'- gGAC-GCCGggcagCCGGCggGCCACGCCGa-- -3'
miRNA:   3'- -CUGcCGGUa----GGUCG--UGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 83694 0.66 0.865586
Target:  5'- uGACGGUCGUCgAGCccagggcgaccguGCCGCGCgG-CAg -3'
miRNA:   3'- -CUGCCGGUAGgUCG-------------UGGUGCGgUaGU- -5'
9107 3' -58.1 NC_002512.2 + 128101 0.66 0.866312
Target:  5'- aGCGcuccGCCGUCgAGgACgGCGCCGUCu -3'
miRNA:   3'- cUGC----CGGUAGgUCgUGgUGCGGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.