miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 94541 0.66 0.869197
Target:  5'- gGACcGCCGuUCCAGCGCCGugaucagcagguucuUGCCgAUCAc -3'
miRNA:   3'- -CUGcCGGU-AGGUCGUGGU---------------GCGG-UAGU- -5'
9107 3' -58.1 NC_002512.2 + 3145 0.66 0.893684
Target:  5'- -cCGGCCGgagcCCGGU-CC-CGCCGUCGu -3'
miRNA:   3'- cuGCCGGUa---GGUCGuGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 112049 0.66 0.893684
Target:  5'- aGAUGGCCuccguGUCCAGgacgucggucCGCCGCGagcCCGUCGc -3'
miRNA:   3'- -CUGCCGG-----UAGGUC----------GUGGUGC---GGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 135723 0.66 0.883134
Target:  5'- cGGCGGCCuUCUucauGCucagggucugccuccGCCGCGUCAUCc -3'
miRNA:   3'- -CUGCCGGuAGGu---CG---------------UGGUGCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 110630 0.66 0.880412
Target:  5'- --gGGCCAgcuUCC-GCACgUACGUCAUCAc -3'
miRNA:   3'- cugCCGGU---AGGuCGUG-GUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 112464 0.66 0.866312
Target:  5'- cACGGCCAgcgUCAGCACCgACuCCAg-- -3'
miRNA:   3'- cUGCCGGUa--GGUCGUGG-UGcGGUagu -5'
9107 3' -58.1 NC_002512.2 + 134345 0.66 0.887154
Target:  5'- cGCGGCCGagcUCCAGaC-CCGCaCCGUCc -3'
miRNA:   3'- cUGCCGGU---AGGUC-GuGGUGcGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 39994 0.66 0.880412
Target:  5'- cGCcGCCGUCCu-CGCCGcCGCCGUCu -3'
miRNA:   3'- cUGcCGGUAGGucGUGGU-GCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 10547 0.66 0.880412
Target:  5'- gGAC-GCCGggcagCCGGCggGCCACGCCGa-- -3'
miRNA:   3'- -CUGcCGGUa----GGUCG--UGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 51639 0.66 0.873464
Target:  5'- cGACGGac--CCGGagACCGCGCCGUCc -3'
miRNA:   3'- -CUGCCgguaGGUCg-UGGUGCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 80489 0.66 0.889791
Target:  5'- cGCGGCCcgucgaggagccggaGUCCuGCGuccCCGCGCCcUCGu -3'
miRNA:   3'- cUGCCGG---------------UAGGuCGU---GGUGCGGuAGU- -5'
9107 3' -58.1 NC_002512.2 + 40208 0.66 0.873464
Target:  5'- cGAgGGCCG-CCGGUACCaguagggccgACGCCgguGUCGg -3'
miRNA:   3'- -CUgCCGGUaGGUCGUGG----------UGCGG---UAGU- -5'
9107 3' -58.1 NC_002512.2 + 137318 0.66 0.866312
Target:  5'- -cCGGCCGcggcgUCGGCGCCuccgACGUCGUCGc -3'
miRNA:   3'- cuGCCGGUa----GGUCGUGG----UGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 5180 0.66 0.893684
Target:  5'- cGGCGGCCGgccCCAGCagggcgggcaggACCGCggGCCAg-- -3'
miRNA:   3'- -CUGCCGGUa--GGUCG------------UGGUG--CGGUagu -5'
9107 3' -58.1 NC_002512.2 + 17723 0.66 0.881096
Target:  5'- gGACGGCCcagccgucccgccgCCAGUGCC-CGCCGa-- -3'
miRNA:   3'- -CUGCCGGua------------GGUCGUGGuGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 73993 0.66 0.887154
Target:  5'- -cCGGaCuCGUCCccGCGCC-CGCCGUCGg -3'
miRNA:   3'- cuGCC-G-GUAGGu-CGUGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 83694 0.66 0.865586
Target:  5'- uGACGGUCGUCgAGCccagggcgaccguGCCGCGCgG-CAg -3'
miRNA:   3'- -CUGCCGGUAGgUCG-------------UGGUGCGgUaGU- -5'
9107 3' -58.1 NC_002512.2 + 128101 0.66 0.866312
Target:  5'- aGCGcuccGCCGUCgAGgACgGCGCCGUCu -3'
miRNA:   3'- cUGC----CGGUAGgUCgUGgUGCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 70956 0.66 0.873464
Target:  5'- --aGGCCG-CCGGCGCCccCGCCGa-- -3'
miRNA:   3'- cugCCGGUaGGUCGUGGu-GCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 84779 0.66 0.866312
Target:  5'- aGAUGGCCGUgucggCCGGCAgCCgcgACGCC-UCGc -3'
miRNA:   3'- -CUGCCGGUA-----GGUCGU-GG---UGCGGuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.