miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 293 0.66 0.873464
Target:  5'- gGGgGGCCAgggCAGC-CCACGCCcUCc -3'
miRNA:   3'- -CUgCCGGUag-GUCGuGGUGCGGuAGu -5'
9107 3' -58.1 NC_002512.2 + 1589 0.67 0.819453
Target:  5'- cGCuGCUucUCCGGCGCU-CGCCAUCAg -3'
miRNA:   3'- cUGcCGGu-AGGUCGUGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 3082 0.67 0.834984
Target:  5'- cGGCGGCCAcggCGGCggccgagACCACGgCGUCGc -3'
miRNA:   3'- -CUGCCGGUag-GUCG-------UGGUGCgGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 3145 0.66 0.893684
Target:  5'- -cCGGCCGgagcCCGGU-CC-CGCCGUCGu -3'
miRNA:   3'- cuGCCGGUa---GGUCGuGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 5180 0.66 0.893684
Target:  5'- cGGCGGCCGgccCCAGCagggcgggcaggACCGCggGCCAg-- -3'
miRNA:   3'- -CUGCCGGUa--GGUCG------------UGGUG--CGGUagu -5'
9107 3' -58.1 NC_002512.2 + 6431 0.7 0.690778
Target:  5'- aGGCGGCCGUCUGGCGg-GCGCCGa-- -3'
miRNA:   3'- -CUGCCGGUAGGUCGUggUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 7141 0.72 0.562531
Target:  5'- cGAgGGagaCGUCCAGCAgCugGCCGUUg -3'
miRNA:   3'- -CUgCCg--GUAGGUCGUgGugCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 7245 0.69 0.738948
Target:  5'- -cCGGCCGUCgCGGCggaGCgGCGuCCGUCGg -3'
miRNA:   3'- cuGCCGGUAG-GUCG---UGgUGC-GGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 8126 0.69 0.745541
Target:  5'- cGACGGCCGcCCAGCuGCCGuucgacggcgcgucCGCCAg-- -3'
miRNA:   3'- -CUGCCGGUaGGUCG-UGGU--------------GCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 9231 0.67 0.858963
Target:  5'- cGGCgGGCCAggUGGCGCuCGCGCCA-CAg -3'
miRNA:   3'- -CUG-CCGGUagGUCGUG-GUGCGGUaGU- -5'
9107 3' -58.1 NC_002512.2 + 9508 0.72 0.543132
Target:  5'- cGACGGCCGgccCCAGCACgGCGgCggCGg -3'
miRNA:   3'- -CUGCCGGUa--GGUCGUGgUGCgGuaGU- -5'
9107 3' -58.1 NC_002512.2 + 10547 0.66 0.880412
Target:  5'- gGAC-GCCGggcagCCGGCggGCCACGCCGa-- -3'
miRNA:   3'- -CUGcCGGUa----GGUCG--UGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 12307 0.68 0.811044
Target:  5'- aGGCGGCgCcgCCGG-ACCGgcuCGCCGUCGc -3'
miRNA:   3'- -CUGCCG-GuaGGUCgUGGU---GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 13512 0.67 0.826885
Target:  5'- cGGCGGCCAggaagCUGcugcggcGCACCACGCacuUCAc -3'
miRNA:   3'- -CUGCCGGUa----GGU-------CGUGGUGCGgu-AGU- -5'
9107 3' -58.1 NC_002512.2 + 17723 0.66 0.881096
Target:  5'- gGACGGCCcagccgucccgccgCCAGUGCC-CGCCGa-- -3'
miRNA:   3'- -CUGCCGGua------------GGUCGUGGuGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 21079 0.67 0.834984
Target:  5'- gGGCGGCgGUCCcGCuCCGgggcgacCGCCGUCu -3'
miRNA:   3'- -CUGCCGgUAGGuCGuGGU-------GCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 22243 0.7 0.710241
Target:  5'- cACGGCCG-CCGGaacggaaaCACCACGCCGa-- -3'
miRNA:   3'- cUGCCGGUaGGUC--------GUGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 22459 0.67 0.819453
Target:  5'- uACGGCCAgaucUCCGuGCAgCAgGCCAUgGa -3'
miRNA:   3'- cUGCCGGU----AGGU-CGUgGUgCGGUAgU- -5'
9107 3' -58.1 NC_002512.2 + 23433 0.71 0.641458
Target:  5'- -cUGGCCGUgCgCAGCgacuacuucACCGCGCCGUCGc -3'
miRNA:   3'- cuGCCGGUA-G-GUCG---------UGGUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 25232 0.67 0.858963
Target:  5'- -cCGGCgAUCCcccGCGCguCGCCGUCc -3'
miRNA:   3'- cuGCCGgUAGGu--CGUGguGCGGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.