miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 119509 0.71 0.621628
Target:  5'- cACGGCCAUgaUCAGCGCCACcaccagGUCGUCc -3'
miRNA:   3'- cUGCCGGUA--GGUCGUGGUG------CGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 50654 0.72 0.552806
Target:  5'- cACGGCCcgCCAGCugCugGCgCA-CAa -3'
miRNA:   3'- cUGCCGGuaGGUCGugGugCG-GUaGU- -5'
9107 3' -58.1 NC_002512.2 + 27759 0.72 0.559608
Target:  5'- cGGCGGCCGagaCCGGCGCCaccagcugacgaggACGCgGUCGg -3'
miRNA:   3'- -CUGCCGGUa--GGUCGUGG--------------UGCGgUAGU- -5'
9107 3' -58.1 NC_002512.2 + 7141 0.72 0.562531
Target:  5'- cGAgGGagaCGUCCAGCAgCugGCCGUUg -3'
miRNA:   3'- -CUgCCg--GUAGGUCGUgGugCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 101608 0.72 0.562531
Target:  5'- gGGCGGCCGUcggcCCGGCGCCGggacgcgaguCGCCGcUCGa -3'
miRNA:   3'- -CUGCCGGUA----GGUCGUGGU----------GCGGU-AGU- -5'
9107 3' -58.1 NC_002512.2 + 226191 0.72 0.591956
Target:  5'- aGACGGCCGcgCCguuAGCgcgcgGCCGgGCCAUCAc -3'
miRNA:   3'- -CUGCCGGUa-GG---UCG-----UGGUgCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 107351 0.72 0.591956
Target:  5'- cGGCGaGCCugauGUCCAGCGgCGCGCCGg-- -3'
miRNA:   3'- -CUGC-CGG----UAGGUCGUgGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 186982 0.71 0.601828
Target:  5'- --aGGCCAUCggccaagagCAGCguauacaccACCACGCCGUCGg -3'
miRNA:   3'- cugCCGGUAG---------GUCG---------UGGUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 49745 0.71 0.611721
Target:  5'- --aGGCCGUCCuGgACCgcccgacgcuggACGCCAUCAu -3'
miRNA:   3'- cugCCGGUAGGuCgUGG------------UGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 9508 0.72 0.543132
Target:  5'- cGACGGCCGgccCCAGCACgGCGgCggCGg -3'
miRNA:   3'- -CUGCCGGUa--GGUCGUGgUGCgGuaGU- -5'
9107 3' -58.1 NC_002512.2 + 80639 0.73 0.533514
Target:  5'- -cCGGCCGUCCgcggcggcGGCGCCGgGuCCGUCGg -3'
miRNA:   3'- cuGCCGGUAGG--------UCGUGGUgC-GGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 90918 0.73 0.533514
Target:  5'- uGGCGGCCGcgaacggggCCGGCgcgGCCGcCGCCGUCGu -3'
miRNA:   3'- -CUGCCGGUa--------GGUCG---UGGU-GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 100204 0.75 0.390671
Target:  5'- gGACGGCgAUUCGG-GCUACGCCGUCGa -3'
miRNA:   3'- -CUGCCGgUAGGUCgUGGUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 134759 0.75 0.424086
Target:  5'- gGGCGGaCCGUCCGGUucgucggcggGCC-CGCCGUCGc -3'
miRNA:   3'- -CUGCC-GGUAGGUCG----------UGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 45217 0.74 0.450239
Target:  5'- gGACGGCCGccgaccggauUUCGGCGCgGCGCCcgCGg -3'
miRNA:   3'- -CUGCCGGU----------AGGUCGUGgUGCGGuaGU- -5'
9107 3' -58.1 NC_002512.2 + 69876 0.73 0.495702
Target:  5'- aACGGCCcugGUUCGGCACC--GCCAUCAg -3'
miRNA:   3'- cUGCCGG---UAGGUCGUGGugCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 83163 0.73 0.495702
Target:  5'- cGGCGGCCGcggCCGcCGCCcCGCCGUCGu -3'
miRNA:   3'- -CUGCCGGUa--GGUcGUGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 113340 0.73 0.514467
Target:  5'- aGGCGGCCGUucauccCCAGCAgCugGCaCGUCu -3'
miRNA:   3'- -CUGCCGGUA------GGUCGUgGugCG-GUAGu -5'
9107 3' -58.1 NC_002512.2 + 137055 0.73 0.514467
Target:  5'- gGACGGCCAgggaggaGGCGCCGCGCCc--- -3'
miRNA:   3'- -CUGCCGGUagg----UCGUGGUGCGGuagu -5'
9107 3' -58.1 NC_002512.2 + 45334 0.73 0.533514
Target:  5'- gGAgGGCCGUCCgccGGC-CCGCGCCGcCGg -3'
miRNA:   3'- -CUgCCGGUAGG---UCGuGGUGCGGUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.