miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 115416 1.08 0.0032
Target:  5'- uGACGGCCAUCCAGCACCACGCCAUCAu -3'
miRNA:   3'- -CUGCCGGUAGGUCGUGGUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 98828 0.8 0.223159
Target:  5'- gGAuCGGCC-UCCGGCGCgGCGCCGUCc -3'
miRNA:   3'- -CU-GCCGGuAGGUCGUGgUGCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 130292 0.79 0.245174
Target:  5'- cGACGGUCAUguggaagaugaUguGCGCCACGCCGUCGu -3'
miRNA:   3'- -CUGCCGGUA-----------GguCGUGGUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 186004 0.78 0.268962
Target:  5'- gGugGGUCGUCCGGCACCuggACGCCugcGUCGc -3'
miRNA:   3'- -CugCCGGUAGGUCGUGG---UGCGG---UAGU- -5'
9107 3' -58.1 NC_002512.2 + 190972 0.77 0.30808
Target:  5'- cGGCGGCCccUCCGGCGCCGuCGCCGa-- -3'
miRNA:   3'- -CUGCCGGu-AGGUCGUGGU-GCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 184644 0.76 0.359024
Target:  5'- cGACGGCgaGUCCgcgGGCGCCGCGCCGa-- -3'
miRNA:   3'- -CUGCCGg-UAGG---UCGUGGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 95986 0.76 0.366766
Target:  5'- cGGCGGUCggcGUCCGGCGCCGCGaCCGcCAg -3'
miRNA:   3'- -CUGCCGG---UAGGUCGUGGUGC-GGUaGU- -5'
9107 3' -58.1 NC_002512.2 + 100204 0.75 0.390671
Target:  5'- gGACGGCgAUUCGG-GCUACGCCGUCGa -3'
miRNA:   3'- -CUGCCGgUAGGUCgUGGUGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 134759 0.75 0.424086
Target:  5'- gGGCGGaCCGUCCGGUucgucggcggGCC-CGCCGUCGc -3'
miRNA:   3'- -CUGCC-GGUAGGUCG----------UGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 223468 0.75 0.424086
Target:  5'- aGACGGCCGccuuccCCAGCGCCGcCGCCGc-- -3'
miRNA:   3'- -CUGCCGGUa-----GGUCGUGGU-GCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 147577 0.74 0.441422
Target:  5'- cGCGGCCcucuacacCCAGCGCUACGcCCGUCGc -3'
miRNA:   3'- cUGCCGGua------GGUCGUGGUGC-GGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 184681 0.74 0.450239
Target:  5'- cGGCGGCCGUCC-GCGCCGC-CgGUCc -3'
miRNA:   3'- -CUGCCGGUAGGuCGUGGUGcGgUAGu -5'
9107 3' -58.1 NC_002512.2 + 45217 0.74 0.450239
Target:  5'- gGACGGCCGccgaccggauUUCGGCGCgGCGCCcgCGg -3'
miRNA:   3'- -CUGCCGGU----------AGGUCGUGgUGCGGuaGU- -5'
9107 3' -58.1 NC_002512.2 + 156773 0.74 0.450239
Target:  5'- cGACGGgCGUCUcgGGCgACCACGCCGUg- -3'
miRNA:   3'- -CUGCCgGUAGG--UCG-UGGUGCGGUAgu -5'
9107 3' -58.1 NC_002512.2 + 174210 0.74 0.486437
Target:  5'- aGCGGCgCGUUCAGCGCCcCGCCcggcGUCGa -3'
miRNA:   3'- cUGCCG-GUAGGUCGUGGuGCGG----UAGU- -5'
9107 3' -58.1 NC_002512.2 + 159004 0.74 0.486437
Target:  5'- cGGCGGCC--CCGGCGuCCGCGCCGg-- -3'
miRNA:   3'- -CUGCCGGuaGGUCGU-GGUGCGGUagu -5'
9107 3' -58.1 NC_002512.2 + 92634 0.73 0.495702
Target:  5'- cGGCGGCCG-CCGGCGCCGgGaCCcgCGc -3'
miRNA:   3'- -CUGCCGGUaGGUCGUGGUgC-GGuaGU- -5'
9107 3' -58.1 NC_002512.2 + 69876 0.73 0.495702
Target:  5'- aACGGCCcugGUUCGGCACC--GCCAUCAg -3'
miRNA:   3'- cUGCCGG---UAGGUCGUGGugCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 83163 0.73 0.495702
Target:  5'- cGGCGGCCGcggCCGcCGCCcCGCCGUCGu -3'
miRNA:   3'- -CUGCCGGUa--GGUcGUGGuGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 113340 0.73 0.514467
Target:  5'- aGGCGGCCGUucauccCCAGCAgCugGCaCGUCu -3'
miRNA:   3'- -CUGCCGGUA------GGUCGUgGugCG-GUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.