miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 3' -58.1 NC_002512.2 + 27759 0.72 0.559608
Target:  5'- cGGCGGCCGagaCCGGCGCCaccagcugacgaggACGCgGUCGg -3'
miRNA:   3'- -CUGCCGGUa--GGUCGUGG--------------UGCGgUAGU- -5'
9107 3' -58.1 NC_002512.2 + 34525 0.69 0.748353
Target:  5'- aGGCaGCCGaCCAGCACCcgggguucccgGCGCCggGUCAc -3'
miRNA:   3'- -CUGcCGGUaGGUCGUGG-----------UGCGG--UAGU- -5'
9107 3' -58.1 NC_002512.2 + 34676 0.68 0.811044
Target:  5'- -cCGGCCGUCCcucagacaccGGCACCcagGCGUCGUa- -3'
miRNA:   3'- cuGCCGGUAGG----------UCGUGG---UGCGGUAgu -5'
9107 3' -58.1 NC_002512.2 + 35932 0.67 0.827703
Target:  5'- cGGCGGCC-UCUcGCGCCAgacgacguucccCGgCCGUCAg -3'
miRNA:   3'- -CUGCCGGuAGGuCGUGGU------------GC-GGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 39672 0.67 0.819453
Target:  5'- -gUGGCCGUcCCGGacgACCGCGCCGcCGa -3'
miRNA:   3'- cuGCCGGUA-GGUCg--UGGUGCGGUaGU- -5'
9107 3' -58.1 NC_002512.2 + 39994 0.66 0.880412
Target:  5'- cGCcGCCGUCCu-CGCCGcCGCCGUCu -3'
miRNA:   3'- cUGcCGGUAGGucGUGGU-GCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 40208 0.66 0.873464
Target:  5'- cGAgGGCCG-CCGGUACCaguagggccgACGCCgguGUCGg -3'
miRNA:   3'- -CUgCCGGUaGGUCGUGG----------UGCGG---UAGU- -5'
9107 3' -58.1 NC_002512.2 + 40281 0.67 0.843694
Target:  5'- uGCGGCCGcCCGcGCACgaACGUCGUCc -3'
miRNA:   3'- cUGCCGGUaGGU-CGUGg-UGCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 42804 0.7 0.680974
Target:  5'- cGACGGCCAUCuuCAGCACgGCcuccugagacGUCAUCc -3'
miRNA:   3'- -CUGCCGGUAG--GUCGUGgUG----------CGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 43425 0.68 0.802483
Target:  5'- -cCGGCCGagCAGCACggagGCGUCGUCGg -3'
miRNA:   3'- cuGCCGGUagGUCGUGg---UGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 43853 0.67 0.835785
Target:  5'- cGACGGCCGUguugCCgAGCGCgACGCaggCGUCc -3'
miRNA:   3'- -CUGCCGGUA----GG-UCGUGgUGCG---GUAGu -5'
9107 3' -58.1 NC_002512.2 + 45217 0.74 0.450239
Target:  5'- gGACGGCCGccgaccggauUUCGGCGCgGCGCCcgCGg -3'
miRNA:   3'- -CUGCCGGU----------AGGUCGUGgUGCGGuaGU- -5'
9107 3' -58.1 NC_002512.2 + 45334 0.73 0.533514
Target:  5'- gGAgGGCCGUCCgccGGC-CCGCGCCGcCGg -3'
miRNA:   3'- -CUgCCGGUAGG---UCGuGGUGCGGUaGU- -5'
9107 3' -58.1 NC_002512.2 + 45376 0.71 0.611721
Target:  5'- uACGGCCAUCUuacuGCugCuCGCCAUUu -3'
miRNA:   3'- cUGCCGGUAGGu---CGugGuGCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 46420 0.67 0.827703
Target:  5'- cACGGCCuugguggCGGCGCCGacguucucgacCGCCAUCGa -3'
miRNA:   3'- cUGCCGGuag----GUCGUGGU-----------GCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 47428 0.71 0.641458
Target:  5'- cACuGCCA-CgAGCACCACGCCcgCAc -3'
miRNA:   3'- cUGcCGGUaGgUCGUGGUGCGGuaGU- -5'
9107 3' -58.1 NC_002512.2 + 47615 0.68 0.811044
Target:  5'- gGACGGacgugcaguuccCCGUCCuGGCGCCGuCGCUGUCc -3'
miRNA:   3'- -CUGCC------------GGUAGG-UCGUGGU-GCGGUAGu -5'
9107 3' -58.1 NC_002512.2 + 49745 0.71 0.611721
Target:  5'- --aGGCCGUCCuGgACCgcccgacgcuggACGCCAUCAu -3'
miRNA:   3'- cugCCGGUAGGuCgUGG------------UGCGGUAGU- -5'
9107 3' -58.1 NC_002512.2 + 49832 0.7 0.680974
Target:  5'- aGGgGGUCGUCCGGCACCcgcacCGCCugggAUCGg -3'
miRNA:   3'- -CUgCCGGUAGGUCGUGGu----GCGG----UAGU- -5'
9107 3' -58.1 NC_002512.2 + 50654 0.72 0.552806
Target:  5'- cACGGCCcgCCAGCugCugGCgCA-CAa -3'
miRNA:   3'- cUGCCGGuaGGUCGugGugCG-GUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.