miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 110737 0.67 0.855734
Target:  5'- gGCCGuguugugCAgGCGGAaggaCGGCUcGGCGUg -3'
miRNA:   3'- -CGGCua-----GUgCGCUUg---GCCGA-CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 45345 0.67 0.855734
Target:  5'- cGCCGGccCGCGCc-GCCGGCUGacccCGCGa -3'
miRNA:   3'- -CGGCUa-GUGCGcuUGGCCGACc---GCGU- -5'
9107 5' -58.9 NC_002512.2 + 151854 0.67 0.855734
Target:  5'- uGUCGGaCACGCG-ACCGGaugacucgugGGCGCc -3'
miRNA:   3'- -CGGCUaGUGCGCuUGGCCga--------CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 50014 0.67 0.855734
Target:  5'- aGCCGGUgCACGuCGucgugaCGGUgGGCGCGc -3'
miRNA:   3'- -CGGCUA-GUGC-GCuug---GCCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 105772 0.67 0.855734
Target:  5'- cGCCGcGUUACccgGCGGAcCCGGaaaGGCGCGg -3'
miRNA:   3'- -CGGC-UAGUG---CGCUU-GGCCga-CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 155625 0.67 0.84825
Target:  5'- cGCCug-UGCGaggaGAGCCGGC-GGCGCu -3'
miRNA:   3'- -CGGcuaGUGCg---CUUGGCCGaCCGCGu -5'
9107 5' -58.9 NC_002512.2 + 153412 0.67 0.84825
Target:  5'- cGgCGGUCGaggugGCGGaauggcggcagGCCGGCcgGGCGCGg -3'
miRNA:   3'- -CgGCUAGUg----CGCU-----------UGGCCGa-CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 139 0.67 0.84825
Target:  5'- cGCCGGggagcCGgGCGGggcGCCGGCggagGaGCGCGc -3'
miRNA:   3'- -CGGCUa----GUgCGCU---UGGCCGa---C-CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 229542 0.67 0.84825
Target:  5'- cGCCGGggagcCGgGCGGggcGCCGGCggagGaGCGCGc -3'
miRNA:   3'- -CGGCUa----GUgCGCU---UGGCCGa---C-CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 9222 0.67 0.84825
Target:  5'- aGCaCGA-CGCgGCGGGCCaGgUGGCGCu -3'
miRNA:   3'- -CG-GCUaGUG-CGCUUGGcCgACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 66780 0.67 0.84825
Target:  5'- aGCUGuUCugGgCGGuCCGGaUGGCGCGc -3'
miRNA:   3'- -CGGCuAGugC-GCUuGGCCgACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 130160 0.67 0.84825
Target:  5'- cCCGG-CG-GCGGGCCGGCccgcgacGGCGCGg -3'
miRNA:   3'- cGGCUaGUgCGCUUGGCCGa------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 90910 0.67 0.84825
Target:  5'- gGCCGGaCugGCG-GCCgcgaacggGGCcGGCGCGg -3'
miRNA:   3'- -CGGCUaGugCGCuUGG--------CCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 106214 0.67 0.84825
Target:  5'- uCCGGUC-CGCG-GCCauGGC-GGCGCGc -3'
miRNA:   3'- cGGCUAGuGCGCuUGG--CCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 147176 0.67 0.840588
Target:  5'- cGCCGGa-ACGCGGGCCcGCgccGCGCAc -3'
miRNA:   3'- -CGGCUagUGCGCUUGGcCGac-CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 93692 0.67 0.840588
Target:  5'- cGCCGGcgUCgACGCGAucCCGGCgaccccgccGCGCGg -3'
miRNA:   3'- -CGGCU--AG-UGCGCUu-GGCCGac-------CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 193915 0.67 0.839813
Target:  5'- gGCgGAUCGCGUcccggacuccgcuGAcgGCCGGggaacgucguCUGGCGCGa -3'
miRNA:   3'- -CGgCUAGUGCG-------------CU--UGGCC----------GACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 225021 0.67 0.837475
Target:  5'- aGCCGGcgccgCACGCGGcgaaccccgcgaugGCCGcGCUccucggcGGCGCGc -3'
miRNA:   3'- -CGGCUa----GUGCGCU--------------UGGC-CGA-------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 116976 0.67 0.835909
Target:  5'- cGCCGA-CGCcccguccggGCGGGCCgacggccgcacgcagGGCgGGCGCAa -3'
miRNA:   3'- -CGGCUaGUG---------CGCUUGG---------------CCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 5081 0.67 0.832756
Target:  5'- cGuuGGUCGuCGUc-GCCGGCgucGGCGCGg -3'
miRNA:   3'- -CggCUAGU-GCGcuUGGCCGa--CCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.