miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 21032 0.7 0.680277
Target:  5'- uGCCGAUUAaGCGAAaaacaggaaCGGCgcGGCGCGu -3'
miRNA:   3'- -CGGCUAGUgCGCUUg--------GCCGa-CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 22388 0.68 0.773688
Target:  5'- cGUCGGUCGCG-GAuCCGGagacgGGCGCc -3'
miRNA:   3'- -CGGCUAGUGCgCUuGGCCga---CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 24852 0.71 0.621996
Target:  5'- gGCCGGUCgGCgGCGGACgCGGCcccgaccgaGGCGCGu -3'
miRNA:   3'- -CGGCUAG-UG-CGCUUG-GCCGa--------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 26376 0.69 0.74374
Target:  5'- uGCUGGUCG-GCGGGCCGaugaacuuccugguGCUGGCGaCGc -3'
miRNA:   3'- -CGGCUAGUgCGCUUGGC--------------CGACCGC-GU- -5'
9107 5' -58.9 NC_002512.2 + 26695 0.73 0.516694
Target:  5'- cGCCGugCugGCGGugACCuGGCUGGCGUc -3'
miRNA:   3'- -CGGCuaGugCGCU--UGG-CCGACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 29910 0.77 0.306051
Target:  5'- cGCCGggCGCGCGGACgCGGCggGaGUGCAu -3'
miRNA:   3'- -CGGCuaGUGCGCUUG-GCCGa-C-CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 31712 0.67 0.824758
Target:  5'- cGCCGA---CGUGGagguccGCCGGCcGGCGCc -3'
miRNA:   3'- -CGGCUaguGCGCU------UGGCCGaCCGCGu -5'
9107 5' -58.9 NC_002512.2 + 33183 0.68 0.773688
Target:  5'- cUCGAUCACG-GAACCgaacaGGCgcccgaugGGCGCGa -3'
miRNA:   3'- cGGCUAGUGCgCUUGG-----CCGa-------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 33263 0.69 0.755669
Target:  5'- cGUCGGcCACccggGCGAACCGGgagaUGGUGCGg -3'
miRNA:   3'- -CGGCUaGUG----CGCUUGGCCg---ACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 33852 0.68 0.781651
Target:  5'- uGCCGGUCAUguugGCGAGCCGGUcccccccuucgcgUccGCGCAc -3'
miRNA:   3'- -CGGCUAGUG----CGCUUGGCCG-------------Ac-CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 37465 0.66 0.890305
Target:  5'- cGCCGA---CGCGAgaaACUGGaaGGUGCAa -3'
miRNA:   3'- -CGGCUaguGCGCU---UGGCCgaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 37759 0.69 0.727919
Target:  5'- cGCCGAagAaGCuGAGCCGGCUGuCGCu -3'
miRNA:   3'- -CGGCUagUgCG-CUUGGCCGACcGCGu -5'
9107 5' -58.9 NC_002512.2 + 39275 0.74 0.471108
Target:  5'- aGCCGAgauCGuCGAGCCGGCUGaucCGCAg -3'
miRNA:   3'- -CGGCUaguGC-GCUUGGCCGACc--GCGU- -5'
9107 5' -58.9 NC_002512.2 + 40423 0.67 0.816601
Target:  5'- aGCCGAUCucgcGCGCGAcgaagaGCUGGUagucgguggccaUGGCgGCGg -3'
miRNA:   3'- -CGGCUAG----UGCGCU------UGGCCG------------ACCG-CGU- -5'
9107 5' -58.9 NC_002512.2 + 45241 0.66 0.87501
Target:  5'- cGCgGcgCcCGCGGacucgccgucggccGCCGGCggGGCGCu -3'
miRNA:   3'- -CGgCuaGuGCGCU--------------UGGCCGa-CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 45345 0.67 0.855734
Target:  5'- cGCCGGccCGCGCc-GCCGGCUGacccCGCGa -3'
miRNA:   3'- -CGGCUa-GUGCGcuUGGCCGACc---GCGU- -5'
9107 5' -58.9 NC_002512.2 + 45432 0.66 0.862312
Target:  5'- cGCCGGcCGCgGCGAcucccuguccgacGCCGGC-GGCGg- -3'
miRNA:   3'- -CGGCUaGUG-CGCU-------------UGGCCGaCCGCgu -5'
9107 5' -58.9 NC_002512.2 + 50014 0.67 0.855734
Target:  5'- aGCCGGUgCACGuCGucgugaCGGUgGGCGCGc -3'
miRNA:   3'- -CGGCUA-GUGC-GCuug---GCCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 52754 0.76 0.348347
Target:  5'- aGCaGAaCGCGCGGGCCcuGCUGGCGCAc -3'
miRNA:   3'- -CGgCUaGUGCGCUUGGc-CGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 53320 0.74 0.444756
Target:  5'- uGCUGG-C-CGUGAACCGGCUGGUGaCGg -3'
miRNA:   3'- -CGGCUaGuGCGCUUGGCCGACCGC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.