miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 139 0.67 0.84825
Target:  5'- cGCCGGggagcCGgGCGGggcGCCGGCggagGaGCGCGc -3'
miRNA:   3'- -CGGCUa----GUgCGCU---UGGCCGa---C-CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 2802 0.69 0.709031
Target:  5'- gGCCGGcggCcgGCGgGAcCCGGCgcgGGCGCGg -3'
miRNA:   3'- -CGGCUa--G--UGCgCUuGGCCGa--CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 3320 0.66 0.896619
Target:  5'- gGCCGGggaGCGCGAGCCGGaguccGaCGCc -3'
miRNA:   3'- -CGGCUag-UGCGCUUGGCCgac--C-GCGu -5'
9107 5' -58.9 NC_002512.2 + 4093 0.72 0.573548
Target:  5'- gGCCGcc--CGCGGcCCGGCcGGCGCAg -3'
miRNA:   3'- -CGGCuaguGCGCUuGGCCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 4449 0.67 0.832756
Target:  5'- uGCCGggCGCGgGggUCGGCgucGGCc-- -3'
miRNA:   3'- -CGGCuaGUGCgCuuGGCCGa--CCGcgu -5'
9107 5' -58.9 NC_002512.2 + 4842 0.69 0.71283
Target:  5'- cGCCGAggagcgcggccaUCGCGgGGuucgccgcgugcggcGCCGGCUGGaggaGCGg -3'
miRNA:   3'- -CGGCU------------AGUGCgCU---------------UGGCCGACCg---CGU- -5'
9107 5' -58.9 NC_002512.2 + 5081 0.67 0.832756
Target:  5'- cGuuGGUCGuCGUc-GCCGGCgucGGCGCGg -3'
miRNA:   3'- -CggCUAGU-GCGcuUGGCCGa--CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 6342 0.73 0.526028
Target:  5'- aCCGggCGCG-GGGCCGGCgggccgcgGGCGCGu -3'
miRNA:   3'- cGGCuaGUGCgCUUGGCCGa-------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 6384 0.66 0.889663
Target:  5'- cGCCGuggucGUCGCGaCGGGCagggaggCGGCggcGGCGCu -3'
miRNA:   3'- -CGGC-----UAGUGC-GCUUG-------GCCGa--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 6656 0.69 0.746507
Target:  5'- aGUCGAagugCAC-CGAGCCGGCcgGGaCGCGc -3'
miRNA:   3'- -CGGCUa---GUGcGCUUGGCCGa-CC-GCGU- -5'
9107 5' -58.9 NC_002512.2 + 7247 0.71 0.62589
Target:  5'- gGCCG-UCGCgGCGGAgCGGCguccgucgggaucgGGCGCGa -3'
miRNA:   3'- -CGGCuAGUG-CGCUUgGCCGa-------------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 9222 0.67 0.84825
Target:  5'- aGCaCGA-CGCgGCGGGCCaGgUGGCGCu -3'
miRNA:   3'- -CG-GCUaGUG-CGCUUGGcCgACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 11325 0.68 0.764732
Target:  5'- gGCCGA-CGCGaCGGacGCCGGCgggaGGCGa- -3'
miRNA:   3'- -CGGCUaGUGC-GCU--UGGCCGa---CCGCgu -5'
9107 5' -58.9 NC_002512.2 + 12097 0.69 0.727919
Target:  5'- cGCCGAUC-CGCcAGCCGGCcgcgaccccGGCGaCGg -3'
miRNA:   3'- -CGGCUAGuGCGcUUGGCCGa--------CCGC-GU- -5'
9107 5' -58.9 NC_002512.2 + 12655 0.72 0.553437
Target:  5'- uGCUGAUCAacuacuaccacauCGgcaCGGGCCGGCUGGCGa- -3'
miRNA:   3'- -CGGCUAGU-------------GC---GCUUGGCCGACCGCgu -5'
9107 5' -58.9 NC_002512.2 + 12883 0.7 0.699495
Target:  5'- aGCCGA-CGCGgGAGaacgagaGGCgGGCGCAg -3'
miRNA:   3'- -CGGCUaGUGCgCUUgg-----CCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 13619 0.7 0.660915
Target:  5'- aCCGAgCugGCGGugCgGGC-GGCGCAc -3'
miRNA:   3'- cGGCUaGugCGCUugG-CCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 14758 0.68 0.78253
Target:  5'- cCCG-UCGCGCGGAccCCGGCcguucUGGCGg- -3'
miRNA:   3'- cGGCuAGUGCGCUU--GGCCG-----ACCGCgu -5'
9107 5' -58.9 NC_002512.2 + 16721 0.66 0.863034
Target:  5'- uGCCGAcCACGCaGAGCUGacccgccaugaGCgGGUGCGa -3'
miRNA:   3'- -CGGCUaGUGCG-CUUGGC-----------CGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 19857 0.66 0.877065
Target:  5'- aGCgGAagGCGCGAcgguaCGGCUGGaCGUu -3'
miRNA:   3'- -CGgCUagUGCGCUug---GCCGACC-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.