miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 84176 0.66 0.890305
Target:  5'- cCCGGUCcagguucgGCG-GGACCaGGC-GGCGCAg -3'
miRNA:   3'- cGGCUAG--------UGCgCUUGG-CCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 106630 0.66 0.890305
Target:  5'- cGCCGGgggguaGCGGcGCCGGCUcGGCGa- -3'
miRNA:   3'- -CGGCUagug--CGCU-UGGCCGA-CCGCgu -5'
9107 5' -58.9 NC_002512.2 + 95940 0.66 0.896619
Target:  5'- cUUGAUCGCGCccuccggcgggGGGCUgaggcccgGGUUGGCGCAg -3'
miRNA:   3'- cGGCUAGUGCG-----------CUUGG--------CCGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 60564 0.66 0.883786
Target:  5'- gGCCGuggaACGCGAuuuCUGGCUGuaCGCGa -3'
miRNA:   3'- -CGGCuag-UGCGCUu--GGCCGACc-GCGU- -5'
9107 5' -58.9 NC_002512.2 + 45432 0.66 0.862312
Target:  5'- cGCCGGcCGCgGCGAcucccuguccgacGCCGGC-GGCGg- -3'
miRNA:   3'- -CGGCUaGUG-CGCU-------------UGGCCGaCCGCgu -5'
9107 5' -58.9 NC_002512.2 + 99017 0.66 0.890305
Target:  5'- cCCGAUaggGCGCG--UCGGCgagGGCGCc -3'
miRNA:   3'- cGGCUAg--UGCGCuuGGCCGa--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 64760 0.66 0.883786
Target:  5'- cGCCGAaCAgGCGGAugacguuccCCGcgggagagauguGCUGGCGCc -3'
miRNA:   3'- -CGGCUaGUgCGCUU---------GGC------------CGACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 6384 0.66 0.889663
Target:  5'- cGCCGuggucGUCGCGaCGGGCagggaggCGGCggcGGCGCu -3'
miRNA:   3'- -CGGC-----UAGUGC-GCUUG-------GCCGa--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 53670 0.66 0.870146
Target:  5'- -aUGAUcCugGCGAAacagaacaGGCUGGCGUAc -3'
miRNA:   3'- cgGCUA-GugCGCUUgg------CCGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 16721 0.66 0.863034
Target:  5'- uGCCGAcCACGCaGAGCUGacccgccaugaGCgGGUGCGa -3'
miRNA:   3'- -CGGCUaGUGCG-CUUGGC-----------CGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 96305 0.66 0.863034
Target:  5'- cGCCGccgCGgGCGGGCCGGUcGcCGCAc -3'
miRNA:   3'- -CGGCua-GUgCGCUUGGCCGaCcGCGU- -5'
9107 5' -58.9 NC_002512.2 + 54519 0.66 0.883786
Target:  5'- uGCCGAUCGaacCGgGAcauccccacuACCaGgaGGCGCAg -3'
miRNA:   3'- -CGGCUAGU---GCgCU----------UGGcCgaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 45241 0.66 0.87501
Target:  5'- cGCgGcgCcCGCGGacucgccgucggccGCCGGCggGGCGCu -3'
miRNA:   3'- -CGgCuaGuGCGCU--------------UGGCCGa-CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 81130 0.66 0.890305
Target:  5'- cGUCGAagUCGCGCacgaagaagGGAcCCGGCUcguggGGCGCu -3'
miRNA:   3'- -CGGCU--AGUGCG---------CUU-GGCCGA-----CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 109009 0.66 0.890305
Target:  5'- cGCCGGcggcgUCGuccUGCGGACCcGC-GGCGCGu -3'
miRNA:   3'- -CGGCU-----AGU---GCGCUUGGcCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 19857 0.66 0.877065
Target:  5'- aGCgGAagGCGCGAcgguaCGGCUGGaCGUu -3'
miRNA:   3'- -CGgCUagUGCGCUug---GCCGACC-GCGu -5'
9107 5' -58.9 NC_002512.2 + 130229 0.66 0.890305
Target:  5'- cCCGAgcugC-CGgGGAUCGGCUcgGGCGCc -3'
miRNA:   3'- cGGCUa---GuGCgCUUGGCCGA--CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 3320 0.66 0.896619
Target:  5'- gGCCGGggaGCGCGAGCCGGaguccGaCGCc -3'
miRNA:   3'- -CGGCUag-UGCGCUUGGCCgac--C-GCGu -5'
9107 5' -58.9 NC_002512.2 + 74252 0.66 0.870146
Target:  5'- cGCCGAa-GCGCc-GCCGGCUcuccucgcacaGGCGCc -3'
miRNA:   3'- -CGGCUagUGCGcuUGGCCGA-----------CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 81295 0.66 0.862312
Target:  5'- uCCGggCcUGCGGgguggguuuguugGCCaGCUGGCGCAg -3'
miRNA:   3'- cGGCuaGuGCGCU-------------UGGcCGACCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.