miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 115453 1.1 0.002092
Target:  5'- cGCCGAUCACGCGAACCGGCUGGCGCAg -3'
miRNA:   3'- -CGGCUAGUGCGCUUGGCCGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 29910 0.77 0.306051
Target:  5'- cGCCGggCGCGCGGACgCGGCggGaGUGCAu -3'
miRNA:   3'- -CGGCuaGUGCGCUUG-GCCGa-C-CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 217781 0.77 0.312819
Target:  5'- cGCCGGgguCGCG-GCCGGCUGGCGgAu -3'
miRNA:   3'- -CGGCUaguGCGCuUGGCCGACCGCgU- -5'
9107 5' -58.9 NC_002512.2 + 119086 0.77 0.312819
Target:  5'- aCCGGUCGCGCGAggagguGCgGGCggccucGGCGCAg -3'
miRNA:   3'- cGGCUAGUGCGCU------UGgCCGa-----CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 191046 0.77 0.326692
Target:  5'- cGCgGcgCACGUGGACCGGUcgcgccUGGCGCu -3'
miRNA:   3'- -CGgCuaGUGCGCUUGGCCG------ACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 120507 0.77 0.333798
Target:  5'- cGCCGAUCGCGguGACgGGgaGGCGCGg -3'
miRNA:   3'- -CGGCUAGUGCgcUUGgCCgaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 52754 0.76 0.348347
Target:  5'- aGCaGAaCGCGCGGGCCcuGCUGGCGCAc -3'
miRNA:   3'- -CGgCUaGUGCGCUUGGc-CGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 109841 0.75 0.41925
Target:  5'- cGCCGggCGuCGgGGACCGGCgUGGCgGCGg -3'
miRNA:   3'- -CGGCuaGU-GCgCUUGGCCG-ACCG-CGU- -5'
9107 5' -58.9 NC_002512.2 + 190082 0.75 0.425123
Target:  5'- gGCCGGUCA-GCGGGCuCGGCUgcgggaccucauccGGCGCu -3'
miRNA:   3'- -CGGCUAGUgCGCUUG-GCCGA--------------CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 53320 0.74 0.444756
Target:  5'- uGCUGG-C-CGUGAACCGGCUGGUGaCGg -3'
miRNA:   3'- -CGGCUaGuGCGCUUGGCCGACCGC-GU- -5'
9107 5' -58.9 NC_002512.2 + 136194 0.74 0.45345
Target:  5'- cGCCGGgaUCGCGuCGAcGCCGGCggccUGGUGCGc -3'
miRNA:   3'- -CGGCU--AGUGC-GCU-UGGCCG----ACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 227207 0.74 0.461352
Target:  5'- cCCGcgCGCggaccaggaggcgGCGGACCGGgaGGCGCGg -3'
miRNA:   3'- cGGCuaGUG-------------CGCUUGGCCgaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 198143 0.74 0.462235
Target:  5'- aGCgCGAgcccCGCGCGGGCCGGgUcGGCGCc -3'
miRNA:   3'- -CG-GCUa---GUGCGCUUGGCCgA-CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 39275 0.74 0.471108
Target:  5'- aGCCGAgauCGuCGAGCCGGCUGaucCGCAg -3'
miRNA:   3'- -CGGCUaguGC-GCUUGGCCGACc--GCGU- -5'
9107 5' -58.9 NC_002512.2 + 129935 0.73 0.48911
Target:  5'- gGCCGAUCAgGC--ACCGGC-GGCaGCAg -3'
miRNA:   3'- -CGGCUAGUgCGcuUGGCCGaCCG-CGU- -5'
9107 5' -58.9 NC_002512.2 + 101420 0.73 0.498231
Target:  5'- uCCGAgggCACaGCGGcgGCCGGC-GGCGCGg -3'
miRNA:   3'- cGGCUa--GUG-CGCU--UGGCCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 78376 0.73 0.507427
Target:  5'- cCCGuGUCGCGCGAaccgcgagGCCGGCUGgagaucgagaGCGCGg -3'
miRNA:   3'- cGGC-UAGUGCGCU--------UGGCCGAC----------CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 82113 0.73 0.516694
Target:  5'- uCCGAgC-CGCGAgucgggacgGCCGcGCUGGCGCAc -3'
miRNA:   3'- cGGCUaGuGCGCU---------UGGC-CGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 26695 0.73 0.516694
Target:  5'- cGCCGugCugGCGGugACCuGGCUGGCGUc -3'
miRNA:   3'- -CGGCuaGugCGCU--UGG-CCGACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 101204 0.73 0.526028
Target:  5'- uGCCGAUCACGaCGGccccguccGCCGGgUuccGGCGCc -3'
miRNA:   3'- -CGGCUAGUGC-GCU--------UGGCCgA---CCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.