miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9107 5' -58.9 NC_002512.2 + 82764 0.7 0.67061
Target:  5'- -aCGGUCAgGUGGGuCCGGCgGGCGUu -3'
miRNA:   3'- cgGCUAGUgCGCUU-GGCCGaCCGCGu -5'
9107 5' -58.9 NC_002512.2 + 112421 0.71 0.602551
Target:  5'- uGCUGAgcaGCGCGAucgacACCGGCgacagcuucUGGUGCAu -3'
miRNA:   3'- -CGGCUag-UGCGCU-----UGGCCG---------ACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 122017 0.71 0.602551
Target:  5'- gGCCGGagGCgGCGGAUCGGCgcucGCGCAc -3'
miRNA:   3'- -CGGCUagUG-CGCUUGGCCGac--CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 134138 0.71 0.621996
Target:  5'- gGCCGucgcggCGCGCGucCCGGCcGGCGgGg -3'
miRNA:   3'- -CGGCua----GUGCGCuuGGCCGaCCGCgU- -5'
9107 5' -58.9 NC_002512.2 + 24852 0.71 0.621996
Target:  5'- gGCCGGUCgGCgGCGGACgCGGCcccgaccgaGGCGCGu -3'
miRNA:   3'- -CGGCUAG-UG-CGCUUG-GCCGa--------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 7247 0.71 0.62589
Target:  5'- gGCCG-UCGCgGCGGAgCGGCguccgucgggaucgGGCGCGa -3'
miRNA:   3'- -CGGCuAGUG-CGCUUgGCCGa-------------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 98553 0.7 0.651198
Target:  5'- cCCGGcguUC-CGCGGAuCCGGCgGGCGCc -3'
miRNA:   3'- cGGCU---AGuGCGCUU-GGCCGaCCGCGu -5'
9107 5' -58.9 NC_002512.2 + 13619 0.7 0.660915
Target:  5'- aCCGAgCugGCGGugCgGGC-GGCGCAc -3'
miRNA:   3'- cGGCUaGugCGCUugG-CCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 134907 0.7 0.67061
Target:  5'- cGCaccugUACGCGGACCGGCgcGGCGUc -3'
miRNA:   3'- -CGgcua-GUGCGCUUGGCCGa-CCGCGu -5'
9107 5' -58.9 NC_002512.2 + 60879 0.71 0.592856
Target:  5'- cGCCcgGAUCGC-CGAGCCGGC--GCGCGa -3'
miRNA:   3'- -CGG--CUAGUGcGCUUGGCCGacCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 4093 0.72 0.573548
Target:  5'- gGCCGcc--CGCGGcCCGGCcGGCGCAg -3'
miRNA:   3'- -CGGCuaguGCGCUuGGCCGaCCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 122684 0.72 0.563947
Target:  5'- cCCGG-C-CGCGGcCCGGCUGGUGCc -3'
miRNA:   3'- cGGCUaGuGCGCUuGGCCGACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 52754 0.76 0.348347
Target:  5'- aGCaGAaCGCGCGGGCCcuGCUGGCGCAc -3'
miRNA:   3'- -CGgCUaGUGCGCUUGGc-CGACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 53320 0.74 0.444756
Target:  5'- uGCUGG-C-CGUGAACCGGCUGGUGaCGg -3'
miRNA:   3'- -CGGCUaGuGCGCUUGGCCGACCGC-GU- -5'
9107 5' -58.9 NC_002512.2 + 136194 0.74 0.45345
Target:  5'- cGCCGGgaUCGCGuCGAcGCCGGCggccUGGUGCGc -3'
miRNA:   3'- -CGGCU--AGUGC-GCU-UGGCCG----ACCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 39275 0.74 0.471108
Target:  5'- aGCCGAgauCGuCGAGCCGGCUGaucCGCAg -3'
miRNA:   3'- -CGGCUaguGC-GCUUGGCCGACc--GCGU- -5'
9107 5' -58.9 NC_002512.2 + 78376 0.73 0.507427
Target:  5'- cCCGuGUCGCGCGAaccgcgagGCCGGCUGgagaucgagaGCGCGg -3'
miRNA:   3'- cGGC-UAGUGCGCU--------UGGCCGAC----------CGCGU- -5'
9107 5' -58.9 NC_002512.2 + 26695 0.73 0.516694
Target:  5'- cGCCGugCugGCGGugACCuGGCUGGCGUc -3'
miRNA:   3'- -CGGCuaGugCGCU--UGG-CCGACCGCGu -5'
9107 5' -58.9 NC_002512.2 + 6342 0.73 0.526028
Target:  5'- aCCGggCGCG-GGGCCGGCgggccgcgGGCGCGu -3'
miRNA:   3'- cGGCuaGUGCgCUUGGCCGa-------CCGCGU- -5'
9107 5' -58.9 NC_002512.2 + 12655 0.72 0.553437
Target:  5'- uGCUGAUCAacuacuaccacauCGgcaCGGGCCGGCUGGCGa- -3'
miRNA:   3'- -CGGCUAGU-------------GC---GCUUGGCCGACCGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.