miRNA display CGI


Results 21 - 40 of 509 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 3' -68 NC_002512.2 + 22954 0.66 0.507543
Target:  5'- aCGCGGCGGuguGCCagCCGUUCaUCaCCCg -3'
miRNA:   3'- gGCGCCGCC---CGGagGGCGGG-AGcGGG- -5'
9112 3' -68 NC_002512.2 + 80430 0.66 0.498962
Target:  5'- uCgGCGGCgucccGGGUccccuuccuCUCCC-CCCgCGCCCg -3'
miRNA:   3'- -GgCGCCG-----CCCG---------GAGGGcGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 116902 0.66 0.533644
Target:  5'- gCCGgGGCGGGCUccucggacggcgUCCCcgGCuucgaCUUCGaCCCg -3'
miRNA:   3'- -GGCgCCGCCCGG------------AGGG--CG-----GGAGC-GGG- -5'
9112 3' -68 NC_002512.2 + 140438 0.66 0.516186
Target:  5'- aCUGCGacuccaUGGGCCcggacgugacCCCGCCgaCGCCCg -3'
miRNA:   3'- -GGCGCc-----GCCCGGa---------GGGCGGgaGCGGG- -5'
9112 3' -68 NC_002512.2 + 25021 0.66 0.542452
Target:  5'- gCCGuCGGuCGcGGaCCUCcacgaggaccgaCCGCCgUCGUCCu -3'
miRNA:   3'- -GGC-GCC-GC-CC-GGAG------------GGCGGgAGCGGG- -5'
9112 3' -68 NC_002512.2 + 1884 0.66 0.507543
Target:  5'- cCCGCGuccCGuccGG-CUCCgGCCCUCgGCCCu -3'
miRNA:   3'- -GGCGCc--GC---CCgGAGGgCGGGAG-CGGG- -5'
9112 3' -68 NC_002512.2 + 12403 0.66 0.498962
Target:  5'- gCgGCGGCGGcGCCgggaUCGCgagCUCGCCg -3'
miRNA:   3'- -GgCGCCGCC-CGGag--GGCGg--GAGCGGg -5'
9112 3' -68 NC_002512.2 + 10590 0.66 0.531889
Target:  5'- gCCGCGgacgacgaaGCGGGCCacggcgucggcgUCCGCCCccUGCCg -3'
miRNA:   3'- -GGCGC---------CGCCCGGa-----------GGGCGGGa-GCGGg -5'
9112 3' -68 NC_002512.2 + 97624 0.66 0.533644
Target:  5'- -gGCGGCGGaCCUaCCGCCUgacgcaGCUCg -3'
miRNA:   3'- ggCGCCGCCcGGAgGGCGGGag----CGGG- -5'
9112 3' -68 NC_002512.2 + 3010 0.66 0.531011
Target:  5'- cCCG-GGCcuuccuggccucccGGGCCUCCCuggcgGCCUgcucCGCCUu -3'
miRNA:   3'- -GGCgCCG--------------CCCGGAGGG-----CGGGa---GCGGG- -5'
9112 3' -68 NC_002512.2 + 70764 0.66 0.516186
Target:  5'- -aGCGGCcgcgcuucugGGGCagaUCCCGUcguCCUCGUCg -3'
miRNA:   3'- ggCGCCG----------CCCGg--AGGGCG---GGAGCGGg -5'
9112 3' -68 NC_002512.2 + 82011 0.66 0.498962
Target:  5'- gUCGCGGCGaGCCg-UCGCCCgggucggggUCGCgCCg -3'
miRNA:   3'- -GGCGCCGCcCGGagGGCGGG---------AGCG-GG- -5'
9112 3' -68 NC_002512.2 + 96293 0.66 0.542452
Target:  5'- gCUGCcGCGGGCCg-CCGCCgCgggcgggccggUCGCCg -3'
miRNA:   3'- -GGCGcCGCCCGGagGGCGG-G-----------AGCGGg -5'
9112 3' -68 NC_002512.2 + 95322 0.66 0.502387
Target:  5'- -aGCGGCGGGCgaaguccccgaucagCUCCagcuCGCUCugUCGCCa -3'
miRNA:   3'- ggCGCCGCCCG---------------GAGG----GCGGG--AGCGGg -5'
9112 3' -68 NC_002512.2 + 22899 0.66 0.510993
Target:  5'- cCCGCGGgccaCGGGCaucccgggcggcuucUUCCUGCugaCCUCGCUg -3'
miRNA:   3'- -GGCGCC----GCCCG---------------GAGGGCG---GGAGCGGg -5'
9112 3' -68 NC_002512.2 + 118499 0.66 0.498107
Target:  5'- gCCGgGGCGGGacggcuacgagguCUUCCUcgaGCCCcgggUCGUCCu -3'
miRNA:   3'- -GGCgCCGCCC-------------GGAGGG---CGGG----AGCGGG- -5'
9112 3' -68 NC_002512.2 + 18150 0.66 0.528383
Target:  5'- gCCGCGucGCGGGCCaggccgaggcacagcUCCCcguaggcgcGCuCCUCGUgCCg -3'
miRNA:   3'- -GGCGC--CGCCCGG---------------AGGG---------CG-GGAGCG-GG- -5'
9112 3' -68 NC_002512.2 + 1448 0.66 0.542452
Target:  5'- aCGCGcGUccGCUccuccccguUCCCGCCCcCGCCCc -3'
miRNA:   3'- gGCGC-CGccCGG---------AGGGCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 9543 0.66 0.541569
Target:  5'- gCCaCGGCGuugacgaGGCCgUCCgGCCCcccggaGCCCg -3'
miRNA:   3'- -GGcGCCGC-------CCGG-AGGgCGGGag----CGGG- -5'
9112 3' -68 NC_002512.2 + 65622 0.66 0.516186
Target:  5'- cCCGaGGCGaucgacccgacGGCC-CCCGCCacggCGCCg -3'
miRNA:   3'- -GGCgCCGC-----------CCGGaGGGCGGga--GCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.