miRNA display CGI


Results 1 - 20 of 509 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 3' -68 NC_002512.2 + 80430 0.66 0.498962
Target:  5'- uCgGCGGCgucccGGGUccccuuccuCUCCC-CCCgCGCCCg -3'
miRNA:   3'- -GgCGCCG-----CCCG---------GAGGGcGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 10652 0.66 0.498962
Target:  5'- -gGCGGCcGaGCacgaUCCCGaCCUCGCCg -3'
miRNA:   3'- ggCGCCGcC-CGg---AGGGCgGGAGCGGg -5'
9112 3' -68 NC_002512.2 + 70764 0.66 0.516186
Target:  5'- -aGCGGCcgcgcuucugGGGCagaUCCCGUcguCCUCGUCg -3'
miRNA:   3'- ggCGCCG----------CCCGg--AGGGCG---GGAGCGGg -5'
9112 3' -68 NC_002512.2 + 12403 0.66 0.498962
Target:  5'- gCgGCGGCGGcGCCgggaUCGCgagCUCGCCg -3'
miRNA:   3'- -GgCGCCGCC-CGGag--GGCGg--GAGCGGg -5'
9112 3' -68 NC_002512.2 + 128910 0.66 0.507543
Target:  5'- aCGUGGUc-GCCuuUCCCGCCCUCGacagcgaCCu -3'
miRNA:   3'- gGCGCCGccCGG--AGGGCGGGAGCg------GG- -5'
9112 3' -68 NC_002512.2 + 35927 0.66 0.516186
Target:  5'- gCCGcCGGC-GGCCUCUCGCgCCagacgacguUC-CCCg -3'
miRNA:   3'- -GGC-GCCGcCCGGAGGGCG-GG---------AGcGGG- -5'
9112 3' -68 NC_002512.2 + 95322 0.66 0.502387
Target:  5'- -aGCGGCGGGCgaaguccccgaucagCUCCagcuCGCUCugUCGCCa -3'
miRNA:   3'- ggCGCCGCCCG---------------GAGG----GCGGG--AGCGGg -5'
9112 3' -68 NC_002512.2 + 79203 0.66 0.516186
Target:  5'- uCCGuCGGCGGcgaccGCCgcgCCCGCggaCCUCgagGCUCg -3'
miRNA:   3'- -GGC-GCCGCC-----CGGa--GGGCG---GGAG---CGGG- -5'
9112 3' -68 NC_002512.2 + 118499 0.66 0.498107
Target:  5'- gCCGgGGCGGGacggcuacgagguCUUCCUcgaGCCCcgggUCGUCCu -3'
miRNA:   3'- -GGCgCCGCCC-------------GGAGGG---CGGG----AGCGGG- -5'
9112 3' -68 NC_002512.2 + 108741 0.66 0.498962
Target:  5'- gCCGCGGcCGGcGUCUCggCCGCCgUCGaCg -3'
miRNA:   3'- -GGCGCC-GCC-CGGAG--GGCGGgAGCgGg -5'
9112 3' -68 NC_002512.2 + 140438 0.66 0.516186
Target:  5'- aCUGCGacuccaUGGGCCcggacgugacCCCGCCgaCGCCCg -3'
miRNA:   3'- -GGCGCc-----GCCCGGa---------GGGCGGgaGCGGG- -5'
9112 3' -68 NC_002512.2 + 82011 0.66 0.498962
Target:  5'- gUCGCGGCGaGCCg-UCGCCCgggucggggUCGCgCCg -3'
miRNA:   3'- -GGCGCCGCcCGGagGGCGGG---------AGCG-GG- -5'
9112 3' -68 NC_002512.2 + 12195 0.66 0.498962
Target:  5'- aCGcCGGCGGGgaagagCCaGCCCaagCGCCCg -3'
miRNA:   3'- gGC-GCCGCCCgga---GGgCGGGa--GCGGG- -5'
9112 3' -68 NC_002512.2 + 44090 0.66 0.516186
Target:  5'- cUCGgGGUaGGCC-CUC-CCCUCGCCg -3'
miRNA:   3'- -GGCgCCGcCCGGaGGGcGGGAGCGGg -5'
9112 3' -68 NC_002512.2 + 1884 0.66 0.507543
Target:  5'- cCCGCGuccCGuccGG-CUCCgGCCCUCgGCCCu -3'
miRNA:   3'- -GGCGCc--GC---CCgGAGGgCGGGAG-CGGG- -5'
9112 3' -68 NC_002512.2 + 85837 0.66 0.516186
Target:  5'- gCGUgaGGC-GGCgCUCCCGCCUagacCGCCUu -3'
miRNA:   3'- gGCG--CCGcCCG-GAGGGCGGGa---GCGGG- -5'
9112 3' -68 NC_002512.2 + 33585 0.66 0.50153
Target:  5'- aCCGCGGCcgcuGGGuccucacCCgcaucagcgauuccuUCCC-CCCUCGCCg -3'
miRNA:   3'- -GGCGCCG----CCC-------GG---------------AGGGcGGGAGCGGg -5'
9112 3' -68 NC_002512.2 + 22954 0.66 0.507543
Target:  5'- aCGCGGCGGuguGCCagCCGUUCaUCaCCCg -3'
miRNA:   3'- gGCGCCGCC---CGGagGGCGGG-AGcGGG- -5'
9112 3' -68 NC_002512.2 + 22899 0.66 0.510993
Target:  5'- cCCGCGGgccaCGGGCaucccgggcggcuucUUCCUGCugaCCUCGCUg -3'
miRNA:   3'- -GGCGCC----GCCCG---------------GAGGGCG---GGAGCGGg -5'
9112 3' -68 NC_002512.2 + 65622 0.66 0.516186
Target:  5'- cCCGaGGCGaucgacccgacGGCC-CCCGCCacggCGCCg -3'
miRNA:   3'- -GGCgCCGC-----------CCGGaGGGCGGga--GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.