miRNA display CGI


Results 1 - 20 of 509 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 3' -68 NC_002512.2 + 113288 1.1 0.000441
Target:  5'- gCCGCGGCGGGCCUCCCGCCCUCGCCCc -3'
miRNA:   3'- -GGCGCCGCCCGGAGGGCGGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 149170 0.83 0.041562
Target:  5'- gCCGCccGCGGGCCcgCgCGCCCUCGCCCc -3'
miRNA:   3'- -GGCGc-CGCCCGGa-GgGCGGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 18108 0.82 0.045665
Target:  5'- cCCGCGGCcacccGGGCCUCCaCGUCCUcccgcagCGCCCg -3'
miRNA:   3'- -GGCGCCG-----CCCGGAGG-GCGGGA-------GCGGG- -5'
9112 3' -68 NC_002512.2 + 38934 0.82 0.045775
Target:  5'- gCCGCGGCGGGCg-CCCGCgUgCGCCCg -3'
miRNA:   3'- -GGCGCCGCCCGgaGGGCGgGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 132546 0.82 0.048036
Target:  5'- -gGCGGCGccgucGGCCUCuCCGCCCUCGaCCCc -3'
miRNA:   3'- ggCGCCGC-----CCGGAG-GGCGGGAGC-GGG- -5'
9112 3' -68 NC_002512.2 + 81441 0.82 0.050405
Target:  5'- cCCGCGGgGGGCCcggccCCCGUCCUCcCCCg -3'
miRNA:   3'- -GGCGCCgCCCGGa----GGGCGGGAGcGGG- -5'
9112 3' -68 NC_002512.2 + 147941 0.8 0.072166
Target:  5'- aCCGCGcGCcGGCCcCuCCGCCCUCGCCg -3'
miRNA:   3'- -GGCGC-CGcCCGGaG-GGCGGGAGCGGg -5'
9112 3' -68 NC_002512.2 + 90598 0.79 0.077493
Target:  5'- cCCGgGGCGGGCg-CCCcCCUUCGCCCc -3'
miRNA:   3'- -GGCgCCGCCCGgaGGGcGGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 79825 0.79 0.085185
Target:  5'- gCgGCGGCGGuccccCCUCCCGCCCcgUCGUCCc -3'
miRNA:   3'- -GgCGCCGCCc----GGAGGGCGGG--AGCGGG- -5'
9112 3' -68 NC_002512.2 + 17451 0.79 0.085993
Target:  5'- gUCGCGGCcGGCCggcccgaacucgaccUCCCGCCCgUCGUCCu -3'
miRNA:   3'- -GGCGCCGcCCGG---------------AGGGCGGG-AGCGGG- -5'
9112 3' -68 NC_002512.2 + 192953 0.78 0.0936
Target:  5'- aCGCGGCcucgucccccGGGuCCUCCCGCUCUgGUCCu -3'
miRNA:   3'- gGCGCCG----------CCC-GGAGGGCGGGAgCGGG- -5'
9112 3' -68 NC_002512.2 + 7465 0.78 0.0936
Target:  5'- gCCGCGGCGcGGCUgCCgGCCCcCGCCg -3'
miRNA:   3'- -GGCGCCGC-CCGGaGGgCGGGaGCGGg -5'
9112 3' -68 NC_002512.2 + 190968 0.78 0.098098
Target:  5'- gCCGCGGCGGccCCUCCggCGCCgUCGCCg -3'
miRNA:   3'- -GGCGCCGCCc-GGAGG--GCGGgAGCGGg -5'
9112 3' -68 NC_002512.2 + 211794 0.78 0.100423
Target:  5'- gCCGCGG-GGGCCgUCCCGCCgCggCGCaCCu -3'
miRNA:   3'- -GGCGCCgCCCGG-AGGGCGG-Ga-GCG-GG- -5'
9112 3' -68 NC_002512.2 + 87852 0.77 0.107712
Target:  5'- cUCGCGGCGGGUCgCCgGCCCcCGgCCg -3'
miRNA:   3'- -GGCGCCGCCCGGaGGgCGGGaGCgGG- -5'
9112 3' -68 NC_002512.2 + 63413 0.77 0.110251
Target:  5'- cCCGCGGUcccGCCgucCCCGCCCUCgaGCCCg -3'
miRNA:   3'- -GGCGCCGcc-CGGa--GGGCGGGAG--CGGG- -5'
9112 3' -68 NC_002512.2 + 222251 0.77 0.110251
Target:  5'- gCCGUGGCGGGUCUCgUgaugGCCUgCGCCCu -3'
miRNA:   3'- -GGCGCCGCCCGGAGgG----CGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 135804 0.77 0.117932
Target:  5'- aCGCGGCGGGgacgccgacggucCCguUCCCGCCg-CGCCCg -3'
miRNA:   3'- gGCGCCGCCC-------------GG--AGGGCGGgaGCGGG- -5'
9112 3' -68 NC_002512.2 + 97166 0.76 0.123803
Target:  5'- cCUGCGGCagcGGGCCgaggaUCUCGCCCacgaCGCCCg -3'
miRNA:   3'- -GGCGCCG---CCCGG-----AGGGCGGGa---GCGGG- -5'
9112 3' -68 NC_002512.2 + 169074 0.76 0.123803
Target:  5'- uCCGCGGCGGcggcGUCgcggCCCGCguCCUCGUCCu -3'
miRNA:   3'- -GGCGCCGCC----CGGa---GGGCG--GGAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.