miRNA display CGI


Results 1 - 20 of 509 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 3' -68 NC_002512.2 + 118993 0.74 0.170338
Target:  5'- cCUGCGGCuGGCCU-CCGCCaagCGCCUc -3'
miRNA:   3'- -GGCGCCGcCCGGAgGGCGGga-GCGGG- -5'
9112 3' -68 NC_002512.2 + 120830 0.75 0.148391
Target:  5'- aCGCGGCGGGUCcggucgUCCCccgagcccccccgGUCCUCGUCCc -3'
miRNA:   3'- gGCGCCGCCCGG------AGGG-------------CGGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 100984 0.75 0.159203
Target:  5'- cCCGCGGCGGGCggaUCgCCagGCCCgucUCGUCCc -3'
miRNA:   3'- -GGCGCCGCCCGg--AG-GG--CGGG---AGCGGG- -5'
9112 3' -68 NC_002512.2 + 133245 0.75 0.162839
Target:  5'- -gGCGGCGGcGCCccggucgcgguuUCCuCGCCCUCcCCCg -3'
miRNA:   3'- ggCGCCGCC-CGG------------AGG-GCGGGAGcGGG- -5'
9112 3' -68 NC_002512.2 + 61767 0.75 0.164315
Target:  5'- gCCGCGGcCGGGCCccucuccuacccugcUCCCGCacguauCCUC-CCCg -3'
miRNA:   3'- -GGCGCC-GCCCGG---------------AGGGCG------GGAGcGGG- -5'
9112 3' -68 NC_002512.2 + 81377 0.74 0.166551
Target:  5'- -gGCGGCGGccGCCUCCuCGUCCcCGUCCc -3'
miRNA:   3'- ggCGCCGCC--CGGAGG-GCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 116395 0.74 0.166551
Target:  5'- cCCGgGGCGGGUCgCCCugacGCCCUCGUg- -3'
miRNA:   3'- -GGCgCCGCCCGGaGGG----CGGGAGCGgg -5'
9112 3' -68 NC_002512.2 + 121374 0.74 0.166551
Target:  5'- cCCGgcCGGuCGGGCgCcgggCCCGgCCUCGCCCu -3'
miRNA:   3'- -GGC--GCC-GCCCG-Ga---GGGCgGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 129295 0.74 0.170338
Target:  5'- gCCGCgGGCGcGGUUUCCCcaCCCgagCGCCCg -3'
miRNA:   3'- -GGCG-CCGC-CCGGAGGGc-GGGa--GCGGG- -5'
9112 3' -68 NC_002512.2 + 142026 0.76 0.138887
Target:  5'- uCCGCGGCcggGGGCCggcgaCCCGCCgCgaggGCCCg -3'
miRNA:   3'- -GGCGCCG---CCCGGa----GGGCGG-Gag--CGGG- -5'
9112 3' -68 NC_002512.2 + 127344 0.76 0.135741
Target:  5'- gCCGCGGaCGaGaGCUgaCCCGCCgUCGCCCu -3'
miRNA:   3'- -GGCGCC-GC-C-CGGa-GGGCGGgAGCGGG- -5'
9112 3' -68 NC_002512.2 + 83419 0.76 0.135741
Target:  5'- uCCGUGGUGGGUgagguuCUCCgGCCUgaagugCGCCCg -3'
miRNA:   3'- -GGCGCCGCCCG------GAGGgCGGGa-----GCGGG- -5'
9112 3' -68 NC_002512.2 + 38934 0.82 0.045775
Target:  5'- gCCGCGGCGGGCg-CCCGCgUgCGCCCg -3'
miRNA:   3'- -GGCGCCGCCCGgaGGGCGgGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 81441 0.82 0.050405
Target:  5'- cCCGCGGgGGGCCcggccCCCGUCCUCcCCCg -3'
miRNA:   3'- -GGCGCCgCCCGGa----GGGCGGGAGcGGG- -5'
9112 3' -68 NC_002512.2 + 79825 0.79 0.085185
Target:  5'- gCgGCGGCGGuccccCCUCCCGCCCcgUCGUCCc -3'
miRNA:   3'- -GgCGCCGCCc----GGAGGGCGGG--AGCGGG- -5'
9112 3' -68 NC_002512.2 + 17451 0.79 0.085993
Target:  5'- gUCGCGGCcGGCCggcccgaacucgaccUCCCGCCCgUCGUCCu -3'
miRNA:   3'- -GGCGCCGcCCGG---------------AGGGCGGG-AGCGGG- -5'
9112 3' -68 NC_002512.2 + 7465 0.78 0.0936
Target:  5'- gCCGCGGCGcGGCUgCCgGCCCcCGCCg -3'
miRNA:   3'- -GGCGCCGC-CCGGaGGgCGGGaGCGGg -5'
9112 3' -68 NC_002512.2 + 63413 0.77 0.110251
Target:  5'- cCCGCGGUcccGCCgucCCCGCCCUCgaGCCCg -3'
miRNA:   3'- -GGCGCCGcc-CGGa--GGGCGGGAG--CGGG- -5'
9112 3' -68 NC_002512.2 + 97166 0.76 0.123803
Target:  5'- cCUGCGGCagcGGGCCgaggaUCUCGCCCacgaCGCCCg -3'
miRNA:   3'- -GGCGCCG---CCCGG-----AGGGCGGGa---GCGGG- -5'
9112 3' -68 NC_002512.2 + 101873 0.76 0.126401
Target:  5'- gCCGgGGCGGGUCUguUCUGCCucgggcgcguccuCUCGCCCg -3'
miRNA:   3'- -GGCgCCGCCCGGA--GGGCGG-------------GAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.