miRNA display CGI


Results 1 - 20 of 509 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 3' -68 NC_002512.2 + 288 0.67 0.457093
Target:  5'- gCGaCGGgGGGCCagggcagCCCacGCCCUCcgGCCUc -3'
miRNA:   3'- gGC-GCCgCCCGGa------GGG--CGGGAG--CGGG- -5'
9112 3' -68 NC_002512.2 + 292 0.7 0.330649
Target:  5'- uCCGCc-CGGGCCccuUCUCGCCCcCGUCCc -3'
miRNA:   3'- -GGCGccGCCCGG---AGGGCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 322 0.67 0.457093
Target:  5'- uCC-CGGCGcGCgCUCCuccgccggCGCCC-CGCCCg -3'
miRNA:   3'- -GGcGCCGCcCG-GAGG--------GCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 378 0.67 0.440878
Target:  5'- gCCGCcuccuGCcGGCCUCcucuccccccgCCGCCuCUCGCCUc -3'
miRNA:   3'- -GGCGc----CGcCCGGAG-----------GGCGG-GAGCGGG- -5'
9112 3' -68 NC_002512.2 + 901 0.72 0.251048
Target:  5'- uCCGCGcuucuucugccucuGCuccGUCUCCCGCCCUcCGCCCc -3'
miRNA:   3'- -GGCGC--------------CGcc-CGGAGGGCGGGA-GCGGG- -5'
9112 3' -68 NC_002512.2 + 1076 0.69 0.372208
Target:  5'- aCCgGCGGCcGGUCUcCCCGuCCCUC-CCUc -3'
miRNA:   3'- -GG-CGCCGcCCGGA-GGGC-GGGAGcGGG- -5'
9112 3' -68 NC_002512.2 + 1322 0.67 0.473622
Target:  5'- aCCGCGGUaaggaagcguccGGcugccguccGCCUCCCGUgucguCCUCGUCg -3'
miRNA:   3'- -GGCGCCG------------CC---------CGGAGGGCG-----GGAGCGGg -5'
9112 3' -68 NC_002512.2 + 1448 0.66 0.542452
Target:  5'- aCGCGcGUccGCUccuccccguUCCCGCCCcCGCCCc -3'
miRNA:   3'- gGCGC-CGccCGG---------AGGGCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 1511 0.69 0.36504
Target:  5'- aCGcCGGacaccucGUCUCUCGCCCUCGCCUc -3'
miRNA:   3'- gGC-GCCgcc----CGGAGGGCGGGAGCGGG- -5'
9112 3' -68 NC_002512.2 + 1645 0.71 0.280128
Target:  5'- cCCGCGucCGGcacguucGCCcuUCCCGCCguCUCGCCCg -3'
miRNA:   3'- -GGCGCc-GCC-------CGG--AGGGCGG--GAGCGGG- -5'
9112 3' -68 NC_002512.2 + 1832 0.72 0.246801
Target:  5'- cCCGCGccgcagccguccGCGGGCgUCUCGCCgCcguccggUCGCCCc -3'
miRNA:   3'- -GGCGC------------CGCCCGgAGGGCGG-G-------AGCGGG- -5'
9112 3' -68 NC_002512.2 + 1884 0.66 0.507543
Target:  5'- cCCGCGuccCGuccGG-CUCCgGCCCUCgGCCCu -3'
miRNA:   3'- -GGCGCc--GC---CCgGAGGgCGGGAG-CGGG- -5'
9112 3' -68 NC_002512.2 + 1979 0.68 0.432894
Target:  5'- -gGCGGCGcGuCCgUCuCCGCCucggaCUCGCCCg -3'
miRNA:   3'- ggCGCCGCcC-GG-AG-GGCGG-----GAGCGGG- -5'
9112 3' -68 NC_002512.2 + 2320 0.71 0.263036
Target:  5'- gCGcCGGCGguccggaGGCCUcggucgcggaCCCGCCCUccuccCGCCCg -3'
miRNA:   3'- gGC-GCCGC-------CCGGA----------GGGCGGGA-----GCGGG- -5'
9112 3' -68 NC_002512.2 + 2415 0.73 0.190446
Target:  5'- cUCGCGGCcGGCCgccCCCGgCCUCuCCCc -3'
miRNA:   3'- -GGCGCCGcCCGGa--GGGCgGGAGcGGG- -5'
9112 3' -68 NC_002512.2 + 2526 0.69 0.344113
Target:  5'- gCCgGCGGCcccGGGCCUCcuCCGUCC-CGUCUc -3'
miRNA:   3'- -GG-CGCCG---CCCGGAG--GGCGGGaGCGGG- -5'
9112 3' -68 NC_002512.2 + 2692 0.71 0.274909
Target:  5'- uCCGCGcGCGGGagcgCCUGCCgCUCcCCCg -3'
miRNA:   3'- -GGCGC-CGCCCgga-GGGCGG-GAGcGGG- -5'
9112 3' -68 NC_002512.2 + 2969 0.71 0.280712
Target:  5'- gCGCcuucucGCGGGCCUCCUugGCCCccgcgUgGCCCg -3'
miRNA:   3'- gGCGc-----CGCCCGGAGGG--CGGG-----AgCGGG- -5'
9112 3' -68 NC_002512.2 + 3010 0.66 0.531011
Target:  5'- cCCG-GGCcuuccuggccucccGGGCCUCCCuggcgGCCUgcucCGCCUu -3'
miRNA:   3'- -GGCgCCG--------------CCCGGAGGG-----CGGGa---GCGGG- -5'
9112 3' -68 NC_002512.2 + 3015 0.68 0.424995
Target:  5'- aUCGCGGCGGccGCUUCucccucuuuCCGCUCguUCGCCa -3'
miRNA:   3'- -GGCGCCGCC--CGGAG---------GGCGGG--AGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.