miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 159025 0.67 0.925874
Target:  5'- cGGGCGgaCCGACGACuucUCCGcGGUCauCUCg -3'
miRNA:   3'- cCUCGCa-GGCUGCUG---AGGC-UCAG--GAG- -5'
9117 3' -57.3 NC_002512.2 + 219278 0.67 0.925874
Target:  5'- gGGGGCGgacgCCGACGccguggcccGCUUCGucGUCCg- -3'
miRNA:   3'- -CCUCGCa---GGCUGC---------UGAGGCu-CAGGag -5'
9117 3' -57.3 NC_002512.2 + 124757 0.67 0.924334
Target:  5'- uGGAGcCGUCgucggcccaGACGACcgcgcagucccgggUCCGGGUCCa- -3'
miRNA:   3'- -CCUC-GCAGg--------CUGCUG--------------AGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 44930 0.67 0.924334
Target:  5'- cGGAcGCGcUCCaugcucucgagccaGGCgGACUCCGAacaccgGUCCUCg -3'
miRNA:   3'- -CCU-CGC-AGG--------------CUG-CUGAGGCU------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 59030 0.67 0.920665
Target:  5'- aGGGCGUCgaGGCGACacucgacgUCCGGGUCg-- -3'
miRNA:   3'- cCUCGCAGg-CUGCUG--------AGGCUCAGgag -5'
9117 3' -57.3 NC_002512.2 + 137325 0.67 0.920665
Target:  5'- -cGGCGU-CGGCGcCUCCGAcGUCgUCg -3'
miRNA:   3'- ccUCGCAgGCUGCuGAGGCU-CAGgAG- -5'
9117 3' -57.3 NC_002512.2 + 146724 0.67 0.920665
Target:  5'- cGGGGCGgcggCCG-CGGCcgCCGGGcCCg- -3'
miRNA:   3'- -CCUCGCa---GGCuGCUGa-GGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 90487 0.67 0.920665
Target:  5'- cGGGGCGUCCu-CGACgggaucggggCCGAGgCCg- -3'
miRNA:   3'- -CCUCGCAGGcuGCUGa---------GGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 116704 0.67 0.915239
Target:  5'- cGGAGCGgaCGGCGACgCCGGucgcGUCC-Cg -3'
miRNA:   3'- -CCUCGCagGCUGCUGaGGCU----CAGGaG- -5'
9117 3' -57.3 NC_002512.2 + 27335 0.67 0.915239
Target:  5'- aGGAGa-UCCGcCGACUgCGAGcCCUg -3'
miRNA:   3'- -CCUCgcAGGCuGCUGAgGCUCaGGAg -5'
9117 3' -57.3 NC_002512.2 + 1886 0.67 0.915239
Target:  5'- --cGCGUcCCGucCGGCUCCG-GcCCUCg -3'
miRNA:   3'- ccuCGCA-GGCu-GCUGAGGCuCaGGAG- -5'
9117 3' -57.3 NC_002512.2 + 200303 0.67 0.915239
Target:  5'- uGGGGCucGUCCGcccucggggaGCGGCUucccgCCGGcGUCCUCc -3'
miRNA:   3'- -CCUCG--CAGGC----------UGCUGA-----GGCU-CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 212467 0.67 0.91357
Target:  5'- aGGAGgGcaUCCgccucgaggacuacGACGACUCCGA--CCUCg -3'
miRNA:   3'- -CCUCgC--AGG--------------CUGCUGAGGCUcaGGAG- -5'
9117 3' -57.3 NC_002512.2 + 98819 0.67 0.909599
Target:  5'- cGGAGCGaCgGAuCGGcCUCCGGcgcggcgccGUCCUCc -3'
miRNA:   3'- -CCUCGCaGgCU-GCU-GAGGCU---------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 169556 0.67 0.909599
Target:  5'- cGGcGGCGUggccuucgCCGGCGuCUCCGcGUCCg- -3'
miRNA:   3'- -CC-UCGCA--------GGCUGCuGAGGCuCAGGag -5'
9117 3' -57.3 NC_002512.2 + 107389 0.67 0.909599
Target:  5'- -aAGCuGUCCGACGACgCUGAGggggaUCUUCu -3'
miRNA:   3'- ccUCG-CAGGCUGCUGaGGCUC-----AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 107085 0.67 0.909599
Target:  5'- gGGGGCGgucgggucggUCGGCGGC-CCGuccuccucGUCCUCg -3'
miRNA:   3'- -CCUCGCa---------GGCUGCUGaGGCu-------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 80224 0.67 0.909599
Target:  5'- cGGAGCGgauagggcagcUCCggGACGugcgggccggGCUCCGugcGGUCCUCc -3'
miRNA:   3'- -CCUCGC-----------AGG--CUGC----------UGAGGC---UCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 208490 0.67 0.90434
Target:  5'- aGGGGCGacuaCGACGACgacagcgagaaugaCGAGuUCCUCa -3'
miRNA:   3'- -CCUCGCag--GCUGCUGag------------GCUC-AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 55325 0.67 0.903745
Target:  5'- cGAGCGUCCagaacccgGugGaacGCUCCuGGUUCUCg -3'
miRNA:   3'- cCUCGCAGG--------CugC---UGAGGcUCAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.