miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 40830 0.66 0.940208
Target:  5'- aGAGCGccgCCGGCcGCUCCGAGgacauuaCCg- -3'
miRNA:   3'- cCUCGCa--GGCUGcUGAGGCUCa------GGag -5'
9117 3' -57.3 NC_002512.2 + 223755 0.66 0.940208
Target:  5'- aGGucGUGUCCGACGACagCGAgGUCg-- -3'
miRNA:   3'- -CCu-CGCAGGCUGCUGagGCU-CAGgag -5'
9117 3' -57.3 NC_002512.2 + 171471 0.66 0.940208
Target:  5'- --cGCGUCCG-CGACUUCaacGUCCUa -3'
miRNA:   3'- ccuCGCAGGCuGCUGAGGcu-CAGGAg -5'
9117 3' -57.3 NC_002512.2 + 217102 0.66 0.940208
Target:  5'- aGGGGCag-CGGgGGCgccgCCGAGUCCUg -3'
miRNA:   3'- -CCUCGcagGCUgCUGa---GGCUCAGGAg -5'
9117 3' -57.3 NC_002512.2 + 186371 0.66 0.935646
Target:  5'- cGGGGaCGUcaugugucuguaCCGACcgcugcaGCUCCGcGUCCUCg -3'
miRNA:   3'- -CCUC-GCA------------GGCUGc------UGAGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 223219 0.66 0.935646
Target:  5'- cGGAGCGcgucCCGGcCGGCUCggugcacuuCGAcUCCUCg -3'
miRNA:   3'- -CCUCGCa---GGCU-GCUGAG---------GCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 79502 0.66 0.935646
Target:  5'- gGGAGgGgg-GACGccucucACUCCGAGUCCa- -3'
miRNA:   3'- -CCUCgCaggCUGC------UGAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 96651 0.66 0.935646
Target:  5'- cGGGGCG-CCGcCGccCUCCc-GUCCUCg -3'
miRNA:   3'- -CCUCGCaGGCuGCu-GAGGcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 200484 0.66 0.935178
Target:  5'- aGGAGuCGUgCGAgGGCggcguccUCCGAccggggcucGUCCUCa -3'
miRNA:   3'- -CCUC-GCAgGCUgCUG-------AGGCU---------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 155902 0.66 0.930868
Target:  5'- cGGGGacgaGUCCGGCG---CCGAcgcGUCCUCc -3'
miRNA:   3'- -CCUCg---CAGGCUGCugaGGCU---CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 222367 0.66 0.930868
Target:  5'- cGGGGCcgccuuccCCGGCgGGCUCUGGcUCCUCa -3'
miRNA:   3'- -CCUCGca------GGCUG-CUGAGGCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 111851 0.66 0.930868
Target:  5'- aGAGCG-CCGcCGuCgCCGcGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCuGCuGaGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 4555 0.66 0.930868
Target:  5'- cGGcGCGaCCGACGGCUgCGGcGUCUg- -3'
miRNA:   3'- -CCuCGCaGGCUGCUGAgGCU-CAGGag -5'
9117 3' -57.3 NC_002512.2 + 43148 0.66 0.930868
Target:  5'- cGGGCGUggugcCCG-CGACguuggCCGAcUCCUCg -3'
miRNA:   3'- cCUCGCA-----GGCuGCUGa----GGCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 58523 0.66 0.930868
Target:  5'- cGGAGCGUCCGcuGCGACacucccaauagCUGAGgagauaCUCc -3'
miRNA:   3'- -CCUCGCAGGC--UGCUGa----------GGCUCag----GAG- -5'
9117 3' -57.3 NC_002512.2 + 134722 0.66 0.930868
Target:  5'- uGGGgG-CCGGgggaaGGCUCCG-GUCCUCg -3'
miRNA:   3'- cCUCgCaGGCUg----CUGAGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 80416 0.67 0.925874
Target:  5'- uGGuGGCGUggcugUCGGCGGCgucCCGGGUCCc- -3'
miRNA:   3'- -CC-UCGCA-----GGCUGCUGa--GGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 94862 0.67 0.925874
Target:  5'- cGAGaucCGUCCGcCGGC-CCGAaUCCUCc -3'
miRNA:   3'- cCUC---GCAGGCuGCUGaGGCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 188691 0.67 0.925874
Target:  5'- cGGGGaCGaUCaCGGCGGCUCCuccgCCUCg -3'
miRNA:   3'- -CCUC-GC-AG-GCUGCUGAGGcucaGGAG- -5'
9117 3' -57.3 NC_002512.2 + 159025 0.67 0.925874
Target:  5'- cGGGCGgaCCGACGACuucUCCGcGGUCauCUCg -3'
miRNA:   3'- cCUCGCa-GGCUGCUG---AGGC-UCAG--GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.