Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9117 | 3' | -57.3 | NC_002512.2 | + | 121049 | 0.71 | 0.738975 |
Target: 5'- cGGAGuCGUCgGACG-CUCCGuacaCCUCg -3' miRNA: 3'- -CCUC-GCAGgCUGCuGAGGCuca-GGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 207506 | 0.71 | 0.738975 |
Target: 5'- cGGAuccGCGaCCGACGACgaggacggggCCGcGUCCUCc -3' miRNA: 3'- -CCU---CGCaGGCUGCUGa---------GGCuCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 32079 | 0.71 | 0.738975 |
Target: 5'- aGGGGgGgucgCCGAUGGCggcCCGGguGUCCUCg -3' miRNA: 3'- -CCUCgCa---GGCUGCUGa--GGCU--CAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 145399 | 0.71 | 0.738975 |
Target: 5'- -cGGCGUCCGGgG--UCCGGGUCUUCu -3' miRNA: 3'- ccUCGCAGGCUgCugAGGCUCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 96947 | 0.71 | 0.757343 |
Target: 5'- cGGGGCGUCgCGcCGACcgucgUCCGcGUCUUCc -3' miRNA: 3'- -CCUCGCAG-GCuGCUG-----AGGCuCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 152943 | 0.7 | 0.766381 |
Target: 5'- gGGAGCGaCUGugGAUccgcgagCgGGGUCCUCu -3' miRNA: 3'- -CCUCGCaGGCugCUGa------GgCUCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 177922 | 0.7 | 0.766381 |
Target: 5'- -cAGCGUCucgucgcuCGGCGGCUCCGcGUCCg- -3' miRNA: 3'- ccUCGCAG--------GCUGCUGAGGCuCAGGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 166023 | 0.7 | 0.766381 |
Target: 5'- gGGAcGCGUUCGGCGGCcguUCCGgggucaucaaGGUCUUCu -3' miRNA: 3'- -CCU-CGCAGGCUGCUG---AGGC----------UCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 65137 | 0.7 | 0.775311 |
Target: 5'- -cGGCGUCCauGGCGGCgcgcuaCCG-GUCCUCg -3' miRNA: 3'- ccUCGCAGG--CUGCUGa-----GGCuCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 102329 | 0.7 | 0.775311 |
Target: 5'- cGGGCcUCCcgGACGACgagCCGGGUCCg- -3' miRNA: 3'- cCUCGcAGG--CUGCUGa--GGCUCAGGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 83801 | 0.7 | 0.781493 |
Target: 5'- aGGAccGCGUCgggcgcgccggcggCGGCGGCUCCGGGcCCg- -3' miRNA: 3'- -CCU--CGCAG--------------GCUGCUGAGGCUCaGGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 113177 | 0.7 | 0.783249 |
Target: 5'- gGGAcGCGaCCGGCGucgccguccGCUCCGcgagcgggagccgGGUCCUCg -3' miRNA: 3'- -CCU-CGCaGGCUGC---------UGAGGC-------------UCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 151195 | 0.7 | 0.784125 |
Target: 5'- cGGAGCcuaaGUCCGAagcggacuuaGGCUCCGAGcCC-Cg -3' miRNA: 3'- -CCUCG----CAGGCUg---------CUGAGGCUCaGGaG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 102322 | 0.7 | 0.792816 |
Target: 5'- cGAGCGgCUGGgcCGGCUCCGGuacgacaagcgcGUCCUCg -3' miRNA: 3'- cCUCGCaGGCU--GCUGAGGCU------------CAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 221121 | 0.7 | 0.792816 |
Target: 5'- gGGAGCuUCCGACGGCgcugaggaCCGcGUCCcCg -3' miRNA: 3'- -CCUCGcAGGCUGCUGa-------GGCuCAGGaG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 188771 | 0.7 | 0.801376 |
Target: 5'- aGGGCGguUCCGgcgGCGGCUCCG-G-CCUCg -3' miRNA: 3'- cCUCGC--AGGC---UGCUGAGGCuCaGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 45531 | 0.7 | 0.801376 |
Target: 5'- cGGGCGgcggCGGCGACUUgGGGUaCCUCu -3' miRNA: 3'- cCUCGCag--GCUGCUGAGgCUCA-GGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 30303 | 0.7 | 0.801376 |
Target: 5'- --cGCGUCCGACGAC-CCGcGGUaCCg- -3' miRNA: 3'- ccuCGCAGGCUGCUGaGGC-UCA-GGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 133934 | 0.7 | 0.801376 |
Target: 5'- cGGcGGCGgcCCGACGGC-CCGcGUCCUg -3' miRNA: 3'- -CC-UCGCa-GGCUGCUGaGGCuCAGGAg -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 216057 | 0.69 | 0.809797 |
Target: 5'- cGGGCGUUCGGgG---CCGGGUCCUCu -3' miRNA: 3'- cCUCGCAGGCUgCugaGGCUCAGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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