miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 108841 1.12 0.002541
Target:  5'- cGGAGCGUCCGACGACUCCGAGUCCUCg -3'
miRNA:   3'- -CCUCGCAGGCUGCUGAGGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 209049 0.79 0.314312
Target:  5'- cGGAGCGauUCCGACGGCUCCuccgacGAcGUCUUCg -3'
miRNA:   3'- -CCUCGC--AGGCUGCUGAGG------CU-CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 214326 0.78 0.372653
Target:  5'- cGAGCaggCCGACGACUCCGGccUCCUCa -3'
miRNA:   3'- cCUCGca-GGCUGCUGAGGCUc-AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 175805 0.75 0.490958
Target:  5'- uGGcGGCGUcCCGGCGGCUCCGcucGUCCg- -3'
miRNA:   3'- -CC-UCGCA-GGCUGCUGAGGCu--CAGGag -5'
9117 3' -57.3 NC_002512.2 + 104875 0.75 0.490958
Target:  5'- cGGGCGgcgCCGACGGCgcgacggggCCGGGUCCa- -3'
miRNA:   3'- cCUCGCa--GGCUGCUGa--------GGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 10708 0.75 0.500088
Target:  5'- aGGaAGCGguagCCGACGGCggCGAaGUCCUCg -3'
miRNA:   3'- -CC-UCGCa---GGCUGCUGagGCU-CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 209563 0.75 0.509292
Target:  5'- cGGAGCGcggUCuCGACGGCUCCucGUCCg- -3'
miRNA:   3'- -CCUCGC---AG-GCUGCUGAGGcuCAGGag -5'
9117 3' -57.3 NC_002512.2 + 29599 0.75 0.509292
Target:  5'- cGAGCcccaGUCCGACGGCUCgucGUCCUCg -3'
miRNA:   3'- cCUCG----CAGGCUGCUGAGgcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 106175 0.75 0.527908
Target:  5'- -aGGCGUaCGGCGACgCCGGGUCCUUc -3'
miRNA:   3'- ccUCGCAgGCUGCUGaGGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 10191 0.75 0.537311
Target:  5'- cGAGCG-CCGACGcucCUCCucGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCUGCu--GAGGcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 103345 0.73 0.614157
Target:  5'- gGGGGCGU-CGACGAgUCCGGGgCCg- -3'
miRNA:   3'- -CCUCGCAgGCUGCUgAGGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 226100 0.73 0.633611
Target:  5'- gGGAcuGC-UCCGGucCGACUCCGGGUCCg- -3'
miRNA:   3'- -CCU--CGcAGGCU--GCUGAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 189562 0.72 0.662767
Target:  5'- uGGuGCGacgucugcuUCCGACcgGGCcgCCGGGUCCUCg -3'
miRNA:   3'- -CCuCGC---------AGGCUG--CUGa-GGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 129989 0.72 0.662767
Target:  5'- gGGAGCG-CCGGCGGCgccgcgugcCCGuGUCCg- -3'
miRNA:   3'- -CCUCGCaGGCUGCUGa--------GGCuCAGGag -5'
9117 3' -57.3 NC_002512.2 + 129929 0.72 0.701292
Target:  5'- gGGGGCuGUCCGACGAaccCUUCGA--CCUCu -3'
miRNA:   3'- -CCUCG-CAGGCUGCU---GAGGCUcaGGAG- -5'
9117 3' -57.3 NC_002512.2 + 219570 0.72 0.701292
Target:  5'- gGGAcGUGUgCGACGGCUCCuacGUCCUg -3'
miRNA:   3'- -CCU-CGCAgGCUGCUGAGGcu-CAGGAg -5'
9117 3' -57.3 NC_002512.2 + 169029 0.71 0.72027
Target:  5'- cGGGCGUCCGcgaGCGGCgCCGGcaucUCCUCg -3'
miRNA:   3'- cCUCGCAGGC---UGCUGaGGCUc---AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 208152 0.71 0.72027
Target:  5'- cGGAGCgGUCCGcGCGG-UCCG-GUCCUUc -3'
miRNA:   3'- -CCUCG-CAGGC-UGCUgAGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 126510 0.71 0.729661
Target:  5'- cGAGCGcCuCGGCGGCUCCGGcGgccugaCCUCg -3'
miRNA:   3'- cCUCGCaG-GCUGCUGAGGCU-Ca-----GGAG- -5'
9117 3' -57.3 NC_002512.2 + 18021 0.71 0.729661
Target:  5'- aGGGCG-CCGACGAUgCUGAgGUCCUUc -3'
miRNA:   3'- cCUCGCaGGCUGCUGaGGCU-CAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.