miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 1331 0.68 0.864292
Target:  5'- aGGaAGCGUCCGGCuGCcgUCCGccucccgugucGUCCUCg -3'
miRNA:   3'- -CC-UCGCAGGCUGcUG--AGGCu----------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 1886 0.67 0.915239
Target:  5'- --cGCGUcCCGucCGGCUCCG-GcCCUCg -3'
miRNA:   3'- ccuCGCA-GGCu-GCUGAGGCuCaGGAG- -5'
9117 3' -57.3 NC_002512.2 + 3668 0.68 0.871366
Target:  5'- --cGCGgCCGACGG-UCCGgaGGUCCUCc -3'
miRNA:   3'- ccuCGCaGGCUGCUgAGGC--UCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 4555 0.66 0.930868
Target:  5'- cGGcGCGaCCGACGGCUgCGGcGUCUg- -3'
miRNA:   3'- -CCuCGCaGGCUGCUGAgGCU-CAGGag -5'
9117 3' -57.3 NC_002512.2 + 10191 0.75 0.537311
Target:  5'- cGAGCG-CCGACGcucCUCCucGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCUGCu--GAGGcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 10708 0.75 0.500088
Target:  5'- aGGaAGCGguagCCGACGGCggCGAaGUCCUCg -3'
miRNA:   3'- -CC-UCGCa---GGCUGCUGagGCU-CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 14828 0.66 0.948692
Target:  5'- cGGuAGaCGccgCCGACGACggUGAGcUCCUCg -3'
miRNA:   3'- -CC-UC-GCa--GGCUGCUGagGCUC-AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 18021 0.71 0.729661
Target:  5'- aGGGCG-CCGACGAUgCUGAgGUCCUUc -3'
miRNA:   3'- cCUCGCaGGCUGCUGaGGCU-CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 27335 0.67 0.915239
Target:  5'- aGGAGa-UCCGcCGACUgCGAGcCCUg -3'
miRNA:   3'- -CCUCgcAGGCuGCUGAgGCUCaGGAg -5'
9117 3' -57.3 NC_002512.2 + 29599 0.75 0.509292
Target:  5'- cGAGCcccaGUCCGACGGCUCgucGUCCUCg -3'
miRNA:   3'- cCUCG----CAGGCUGCUGAGgcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 30303 0.7 0.801376
Target:  5'- --cGCGUCCGACGAC-CCGcGGUaCCg- -3'
miRNA:   3'- ccuCGCAGGCUGCUGaGGC-UCA-GGag -5'
9117 3' -57.3 NC_002512.2 + 32079 0.71 0.738975
Target:  5'- aGGGGgGgucgCCGAUGGCggcCCGGguGUCCUCg -3'
miRNA:   3'- -CCUCgCa---GGCUGCUGa--GGCU--CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 33579 0.68 0.871366
Target:  5'- aGGAGaa-CCG-CGGCcgCUGGGUCCUCa -3'
miRNA:   3'- -CCUCgcaGGCuGCUGa-GGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 34609 0.69 0.818073
Target:  5'- -uGGCGUCCGuccCGACUUCGAGUgucccgCCUg -3'
miRNA:   3'- ccUCGCAGGCu--GCUGAGGCUCA------GGAg -5'
9117 3' -57.3 NC_002512.2 + 34958 0.69 0.826196
Target:  5'- cGGAGCGgCCG-CGA--CCGGGUCCg- -3'
miRNA:   3'- -CCUCGCaGGCuGCUgaGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 37668 0.69 0.848071
Target:  5'- cGGGCGacgucgaagaggCCGAaGGgUCCGGGUCCUCc -3'
miRNA:   3'- cCUCGCa-----------GGCUgCUgAGGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 40830 0.66 0.940208
Target:  5'- aGAGCGccgCCGGCcGCUCCGAGgacauuaCCg- -3'
miRNA:   3'- cCUCGCa--GGCUGcUGAGGCUCa------GGag -5'
9117 3' -57.3 NC_002512.2 + 43148 0.66 0.930868
Target:  5'- cGGGCGUggugcCCG-CGACguuggCCGAcUCCUCg -3'
miRNA:   3'- cCUCGCA-----GGCuGCUGa----GGCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 44930 0.67 0.924334
Target:  5'- cGGAcGCGcUCCaugcucucgagccaGGCgGACUCCGAacaccgGUCCUCg -3'
miRNA:   3'- -CCU-CGC-AGG--------------CUG-CUGAGGCU------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 45531 0.7 0.801376
Target:  5'- cGGGCGgcggCGGCGACUUgGGGUaCCUCu -3'
miRNA:   3'- cCUCGCag--GCUGCUGAGgCUCA-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.