miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 226386 0.69 0.834159
Target:  5'- uGGAGgG-CCGACGACggcgCCGGGaCCcgUCg -3'
miRNA:   3'- -CCUCgCaGGCUGCUGa---GGCUCaGG--AG- -5'
9117 3' -57.3 NC_002512.2 + 226100 0.73 0.633611
Target:  5'- gGGAcuGC-UCCGGucCGACUCCGGGUCCg- -3'
miRNA:   3'- -CCU--CGcAGGCU--GCUGAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 225544 0.67 0.901948
Target:  5'- gGGAGCGcggaggacgacuucUUCGGCGACgaggCCGA--CCUCg -3'
miRNA:   3'- -CCUCGC--------------AGGCUGCUGa---GGCUcaGGAG- -5'
9117 3' -57.3 NC_002512.2 + 224559 0.68 0.884927
Target:  5'- gGGGGa-UUCGGCGACgucguaUCUGAGUCCUUu -3'
miRNA:   3'- -CCUCgcAGGCUGCUG------AGGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 223755 0.66 0.940208
Target:  5'- aGGucGUGUCCGACGACagCGAgGUCg-- -3'
miRNA:   3'- -CCu-CGCAGGCUGCUGagGCU-CAGgag -5'
9117 3' -57.3 NC_002512.2 + 223219 0.66 0.935646
Target:  5'- cGGAGCGcgucCCGGcCGGCUCggugcacuuCGAcUCCUCg -3'
miRNA:   3'- -CCUCGCa---GGCU-GCUGAG---------GCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 222367 0.66 0.930868
Target:  5'- cGGGGCcgccuuccCCGGCgGGCUCUGGcUCCUCa -3'
miRNA:   3'- -CCUCGca------GGCUG-CUGAGGCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 221121 0.7 0.792816
Target:  5'- gGGAGCuUCCGACGGCgcugaggaCCGcGUCCcCg -3'
miRNA:   3'- -CCUCGcAGGCUGCUGa-------GGCuCAGGaG- -5'
9117 3' -57.3 NC_002512.2 + 220718 0.68 0.864292
Target:  5'- cGAGaCGUUCGugGGCUUCGA--CCUCc -3'
miRNA:   3'- cCUC-GCAGGCugCUGAGGCUcaGGAG- -5'
9117 3' -57.3 NC_002512.2 + 219570 0.72 0.701292
Target:  5'- gGGAcGUGUgCGACGGCUCCuacGUCCUg -3'
miRNA:   3'- -CCU-CGCAgGCUGCUGAGGcu-CAGGAg -5'
9117 3' -57.3 NC_002512.2 + 219278 0.67 0.925874
Target:  5'- gGGGGCGgacgCCGACGccguggcccGCUUCGucGUCCg- -3'
miRNA:   3'- -CCUCGCa---GGCUGC---------UGAGGCu-CAGGag -5'
9117 3' -57.3 NC_002512.2 + 217875 0.68 0.878246
Target:  5'- gGGAgcGCGUCCGAgauCGGCggCCGcGUCgUCg -3'
miRNA:   3'- -CCU--CGCAGGCU---GCUGa-GGCuCAGgAG- -5'
9117 3' -57.3 NC_002512.2 + 217579 0.68 0.863574
Target:  5'- cGAGCcgGUCCGGCGGCgCCGccucgggGGUCgUCg -3'
miRNA:   3'- cCUCG--CAGGCUGCUGaGGC-------UCAGgAG- -5'
9117 3' -57.3 NC_002512.2 + 217102 0.66 0.940208
Target:  5'- aGGGGCag-CGGgGGCgccgCCGAGUCCUg -3'
miRNA:   3'- -CCUCGcagGCUgCUGa---GGCUCAGGAg -5'
9117 3' -57.3 NC_002512.2 + 216057 0.69 0.809797
Target:  5'- cGGGCGUUCGGgG---CCGGGUCCUCu -3'
miRNA:   3'- cCUCGCAGGCUgCugaGGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 214771 0.66 0.944556
Target:  5'- --cGCaGUCCGGCGccggucgccCUCCGGGUCCc- -3'
miRNA:   3'- ccuCG-CAGGCUGCu--------GAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 214326 0.78 0.372653
Target:  5'- cGAGCaggCCGACGACUCCGGccUCCUCa -3'
miRNA:   3'- cCUCGca-GGCUGCUGAGGCUc-AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 213676 0.68 0.857029
Target:  5'- cGGAGgGgagcCCGGCGucGC-CCGcGGUCCUCg -3'
miRNA:   3'- -CCUCgCa---GGCUGC--UGaGGC-UCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 213030 0.68 0.864292
Target:  5'- aGGuGCGUCCGcCGGCUgCGGGggaUCg -3'
miRNA:   3'- -CCuCGCAGGCuGCUGAgGCUCaggAG- -5'
9117 3' -57.3 NC_002512.2 + 212868 0.66 0.944556
Target:  5'- cGAGCGUCCccuccuccggaGACGGCggccauggaCCGAGUCg-- -3'
miRNA:   3'- cCUCGCAGG-----------CUGCUGa--------GGCUCAGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.