miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 80640 0.69 0.818073
Target:  5'- -cGGcCGUCCGcgGCGGCggcgCCGGGUCCgUCg -3'
miRNA:   3'- ccUC-GCAGGC--UGCUGa---GGCUCAGG-AG- -5'
9117 3' -57.3 NC_002512.2 + 96947 0.71 0.757343
Target:  5'- cGGGGCGUCgCGcCGACcgucgUCCGcGUCUUCc -3'
miRNA:   3'- -CCUCGCAG-GCuGCUG-----AGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 152943 0.7 0.766381
Target:  5'- gGGAGCGaCUGugGAUccgcgagCgGGGUCCUCu -3'
miRNA:   3'- -CCUCGCaGGCugCUGa------GgCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 65137 0.7 0.775311
Target:  5'- -cGGCGUCCauGGCGGCgcgcuaCCG-GUCCUCg -3'
miRNA:   3'- ccUCGCAGG--CUGCUGa-----GGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 83801 0.7 0.781493
Target:  5'- aGGAccGCGUCgggcgcgccggcggCGGCGGCUCCGGGcCCg- -3'
miRNA:   3'- -CCU--CGCAG--------------GCUGCUGAGGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 102322 0.7 0.792816
Target:  5'- cGAGCGgCUGGgcCGGCUCCGGuacgacaagcgcGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCU--GCUGAGGCU------------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 30303 0.7 0.801376
Target:  5'- --cGCGUCCGACGAC-CCGcGGUaCCg- -3'
miRNA:   3'- ccuCGCAGGCUGCUGaGGC-UCA-GGag -5'
9117 3' -57.3 NC_002512.2 + 45531 0.7 0.801376
Target:  5'- cGGGCGgcggCGGCGACUUgGGGUaCCUCu -3'
miRNA:   3'- cCUCGCag--GCUGCUGAGgCUCA-GGAG- -5'
9117 3' -57.3 NC_002512.2 + 133934 0.7 0.801376
Target:  5'- cGGcGGCGgcCCGACGGC-CCGcGUCCUg -3'
miRNA:   3'- -CC-UCGCa-GGCUGCUGaGGCuCAGGAg -5'
9117 3' -57.3 NC_002512.2 + 121049 0.71 0.738975
Target:  5'- cGGAGuCGUCgGACG-CUCCGuacaCCUCg -3'
miRNA:   3'- -CCUC-GCAGgCUGCuGAGGCuca-GGAG- -5'
9117 3' -57.3 NC_002512.2 + 32079 0.71 0.738975
Target:  5'- aGGGGgGgucgCCGAUGGCggcCCGGguGUCCUCg -3'
miRNA:   3'- -CCUCgCa---GGCUGCUGa--GGCU--CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 126510 0.71 0.729661
Target:  5'- cGAGCGcCuCGGCGGCUCCGGcGgccugaCCUCg -3'
miRNA:   3'- cCUCGCaG-GCUGCUGAGGCU-Ca-----GGAG- -5'
9117 3' -57.3 NC_002512.2 + 10708 0.75 0.500088
Target:  5'- aGGaAGCGguagCCGACGGCggCGAaGUCCUCg -3'
miRNA:   3'- -CC-UCGCa---GGCUGCUGagGCU-CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 29599 0.75 0.509292
Target:  5'- cGAGCcccaGUCCGACGGCUCgucGUCCUCg -3'
miRNA:   3'- cCUCG----CAGGCUGCUGAGgcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 106175 0.75 0.527908
Target:  5'- -aGGCGUaCGGCGACgCCGGGUCCUUc -3'
miRNA:   3'- ccUCGCAgGCUGCUGaGGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 10191 0.75 0.537311
Target:  5'- cGAGCG-CCGACGcucCUCCucGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCUGCu--GAGGcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 103345 0.73 0.614157
Target:  5'- gGGGGCGU-CGACGAgUCCGGGgCCg- -3'
miRNA:   3'- -CCUCGCAgGCUGCUgAGGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 129989 0.72 0.662767
Target:  5'- gGGAGCG-CCGGCGGCgccgcgugcCCGuGUCCg- -3'
miRNA:   3'- -CCUCGCaGGCUGCUGa--------GGCuCAGGag -5'
9117 3' -57.3 NC_002512.2 + 129929 0.72 0.701292
Target:  5'- gGGGGCuGUCCGACGAaccCUUCGA--CCUCu -3'
miRNA:   3'- -CCUCG-CAGGCUGCU---GAGGCUcaGGAG- -5'
9117 3' -57.3 NC_002512.2 + 18021 0.71 0.729661
Target:  5'- aGGGCG-CCGACGAUgCUGAgGUCCUUc -3'
miRNA:   3'- cCUCGCaGGCUGCUGaGGCU-CAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.