miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 186211 0.65 0.950681
Target:  5'- cGGGCG-CCGAUGACgccgcggccgccaCCGAgggcgaggucccgGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCUGCUGa------------GGCU-------------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 223219 0.66 0.935646
Target:  5'- cGGAGCGcgucCCGGcCGGCUCggugcacuuCGAcUCCUCg -3'
miRNA:   3'- -CCUCGCa---GGCU-GCUGAG---------GCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 96651 0.66 0.935646
Target:  5'- cGGGGCG-CCGcCGccCUCCc-GUCCUCg -3'
miRNA:   3'- -CCUCGCaGGCuGCu-GAGGcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 108841 1.12 0.002541
Target:  5'- cGGAGCGUCCGACGACUCCGAGUCCUCg -3'
miRNA:   3'- -CCUCGCAGGCUGCUGAGGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 173300 0.66 0.948288
Target:  5'- uGGAGgG-CCGucauCGGCUCCaacgccgccugcgGGGUCUUCg -3'
miRNA:   3'- -CCUCgCaGGCu---GCUGAGG-------------CUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 212868 0.66 0.944556
Target:  5'- cGAGCGUCCccuccuccggaGACGGCggccauggaCCGAGUCg-- -3'
miRNA:   3'- cCUCGCAGG-----------CUGCUGa--------GGCUCAGgag -5'
9117 3' -57.3 NC_002512.2 + 112477 0.66 0.944556
Target:  5'- cGGAGCGgaUGACG-C-CCuGGUCCUCg -3'
miRNA:   3'- -CCUCGCagGCUGCuGaGGcUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 149063 0.66 0.944556
Target:  5'- cGGGGCccgcUCCGcCGACgCCGAGgcgcgcgcgcgcUCCUCc -3'
miRNA:   3'- -CCUCGc---AGGCuGCUGaGGCUC------------AGGAG- -5'
9117 3' -57.3 NC_002512.2 + 178235 0.66 0.944556
Target:  5'- aGGGUcUCCGgggacggcGCGGuCUCCGGGUCCgUCg -3'
miRNA:   3'- cCUCGcAGGC--------UGCU-GAGGCUCAGG-AG- -5'
9117 3' -57.3 NC_002512.2 + 217102 0.66 0.940208
Target:  5'- aGGGGCag-CGGgGGCgccgCCGAGUCCUg -3'
miRNA:   3'- -CCUCGcagGCUgCUGa---GGCUCAGGAg -5'
9117 3' -57.3 NC_002512.2 + 111249 0.66 0.940208
Target:  5'- cGGAGCGUCgGGCGGCacgcggaCGAG-CUUg -3'
miRNA:   3'- -CCUCGCAGgCUGCUGag-----GCUCaGGAg -5'
9117 3' -57.3 NC_002512.2 + 214771 0.66 0.944556
Target:  5'- --cGCaGUCCGGCGccggucgccCUCCGGGUCCc- -3'
miRNA:   3'- ccuCG-CAGGCUGCu--------GAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 191747 0.66 0.948692
Target:  5'- cGGGGUGUCCGugG---CCG--UCCUCg -3'
miRNA:   3'- -CCUCGCAGGCugCugaGGCucAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 171471 0.66 0.940208
Target:  5'- --cGCGUCCG-CGACUUCaacGUCCUa -3'
miRNA:   3'- ccuCGCAGGCuGCUGAGGcu-CAGGAg -5'
9117 3' -57.3 NC_002512.2 + 158937 0.66 0.948692
Target:  5'- gGGGGCG-CCGGCGGcCUCUcGGUCa-- -3'
miRNA:   3'- -CCUCGCaGGCUGCU-GAGGcUCAGgag -5'
9117 3' -57.3 NC_002512.2 + 74599 0.66 0.944556
Target:  5'- cGGGGCccUCCGuCGGCUC-GAGccgCCUCg -3'
miRNA:   3'- -CCUCGc-AGGCuGCUGAGgCUCa--GGAG- -5'
9117 3' -57.3 NC_002512.2 + 223755 0.66 0.940208
Target:  5'- aGGucGUGUCCGACGACagCGAgGUCg-- -3'
miRNA:   3'- -CCu-CGCAGGCUGCUGagGCU-CAGgag -5'
9117 3' -57.3 NC_002512.2 + 186371 0.66 0.935646
Target:  5'- cGGGGaCGUcaugugucuguaCCGACcgcugcaGCUCCGcGUCCUCg -3'
miRNA:   3'- -CCUC-GCA------------GGCUGc------UGAGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 146049 0.66 0.948692
Target:  5'- aGAGCGccUgCGACGAC-CCGGGcCCg- -3'
miRNA:   3'- cCUCGC--AgGCUGCUGaGGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 117125 0.66 0.944556
Target:  5'- cGGGGCcccgUCGGCGGCgUUCGAGUCgCUg -3'
miRNA:   3'- -CCUCGca--GGCUGCUG-AGGCUCAG-GAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.