Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9117 | 3' | -57.3 | NC_002512.2 | + | 186211 | 0.65 | 0.950681 |
Target: 5'- cGGGCG-CCGAUGACgccgcggccgccaCCGAgggcgaggucccgGUCCUCg -3' miRNA: 3'- cCUCGCaGGCUGCUGa------------GGCU-------------CAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 146049 | 0.66 | 0.948692 |
Target: 5'- aGAGCGccUgCGACGAC-CCGGGcCCg- -3' miRNA: 3'- cCUCGC--AgGCUGCUGaGGCUCaGGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 111851 | 0.66 | 0.930868 |
Target: 5'- aGAGCG-CCGcCGuCgCCGcGUCCUCg -3' miRNA: 3'- cCUCGCaGGCuGCuGaGGCuCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 194643 | 0.66 | 0.940208 |
Target: 5'- cGGGGCacccGUCCGAgguCGACggaugaucugUCCGAguaacguguacaGUCCUCg -3' miRNA: 3'- -CCUCG----CAGGCU---GCUG----------AGGCU------------CAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 173300 | 0.66 | 0.948288 |
Target: 5'- uGGAGgG-CCGucauCGGCUCCaacgccgccugcgGGGUCUUCg -3' miRNA: 3'- -CCUCgCaGGCu---GCUGAGG-------------CUCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 14828 | 0.66 | 0.948692 |
Target: 5'- cGGuAGaCGccgCCGACGACggUGAGcUCCUCg -3' miRNA: 3'- -CC-UC-GCa--GGCUGCUGagGCUC-AGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 158937 | 0.66 | 0.948692 |
Target: 5'- gGGGGCG-CCGGCGGcCUCUcGGUCa-- -3' miRNA: 3'- -CCUCGCaGGCUGCU-GAGGcUCAGgag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 134722 | 0.66 | 0.930868 |
Target: 5'- uGGGgG-CCGGgggaaGGCUCCG-GUCCUCg -3' miRNA: 3'- cCUCgCaGGCUg----CUGAGGCuCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 191747 | 0.66 | 0.948692 |
Target: 5'- cGGGGUGUCCGugG---CCG--UCCUCg -3' miRNA: 3'- -CCUCGCAGGCugCugaGGCucAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 90195 | 0.66 | 0.941973 |
Target: 5'- aGGAGCGguaaCCaGACGACggucgucuucaggaCCGAGUCgaCg -3' miRNA: 3'- -CCUCGCa---GG-CUGCUGa-------------GGCUCAGgaG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 64936 | 0.66 | 0.944556 |
Target: 5'- -cGGgGUCCaGcACGuACUCCcGGUCCUCg -3' miRNA: 3'- ccUCgCAGG-C-UGC-UGAGGcUCAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 40830 | 0.66 | 0.940208 |
Target: 5'- aGAGCGccgCCGGCcGCUCCGAGgacauuaCCg- -3' miRNA: 3'- cCUCGCa--GGCUGcUGAGGCUCa------GGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 58523 | 0.66 | 0.930868 |
Target: 5'- cGGAGCGUCCGcuGCGACacucccaauagCUGAGgagauaCUCc -3' miRNA: 3'- -CCUCGCAGGC--UGCUGa----------GGCUCag----GAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 79502 | 0.66 | 0.935646 |
Target: 5'- gGGAGgGgg-GACGccucucACUCCGAGUCCa- -3' miRNA: 3'- -CCUCgCaggCUGC------UGAGGCUCAGGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 43148 | 0.66 | 0.930868 |
Target: 5'- cGGGCGUggugcCCG-CGACguuggCCGAcUCCUCg -3' miRNA: 3'- cCUCGCA-----GGCuGCUGa----GGCUcAGGAG- -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 212868 | 0.66 | 0.944556 |
Target: 5'- cGAGCGUCCccuccuccggaGACGGCggccauggaCCGAGUCg-- -3' miRNA: 3'- cCUCGCAGG-----------CUGCUGa--------GGCUCAGgag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 117125 | 0.66 | 0.944556 |
Target: 5'- cGGGGCcccgUCGGCGGCgUUCGAGUCgCUg -3' miRNA: 3'- -CCUCGca--GGCUGCUG-AGGCUCAG-GAg -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 4555 | 0.66 | 0.930868 |
Target: 5'- cGGcGCGaCCGACGGCUgCGGcGUCUg- -3' miRNA: 3'- -CCuCGCaGGCUGCUGAgGCU-CAGGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 134403 | 0.66 | 0.944556 |
Target: 5'- uGGAuGCGg-CGGCGGUUCCGGGUCUg- -3' miRNA: 3'- -CCU-CGCagGCUGCUGAGGCUCAGGag -5' |
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9117 | 3' | -57.3 | NC_002512.2 | + | 126461 | 0.66 | 0.944556 |
Target: 5'- gGGAcgacGCGUUCGACGGCgucuucgaCGAGUUCg- -3' miRNA: 3'- -CCU----CGCAGGCUGCUGag------GCUCAGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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