miRNA display CGI


Results 21 - 40 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 79502 0.66 0.935646
Target:  5'- gGGAGgGgg-GACGccucucACUCCGAGUCCa- -3'
miRNA:   3'- -CCUCgCaggCUGC------UGAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 43148 0.66 0.930868
Target:  5'- cGGGCGUggugcCCG-CGACguuggCCGAcUCCUCg -3'
miRNA:   3'- cCUCGCA-----GGCuGCUGa----GGCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 95781 0.66 0.944131
Target:  5'- gGGGGCGUCCGAgcgguaGGCgCCGGGgcgcggaUCCg- -3'
miRNA:   3'- -CCUCGCAGGCUg-----CUGaGGCUC-------AGGag -5'
9117 3' -57.3 NC_002512.2 + 112477 0.66 0.944556
Target:  5'- cGGAGCGgaUGACG-C-CCuGGUCCUCg -3'
miRNA:   3'- -CCUCGCagGCUGCuGaGGcUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 171471 0.66 0.940208
Target:  5'- --cGCGUCCG-CGACUUCaacGUCCUa -3'
miRNA:   3'- ccuCGCAGGCuGCUGAGGcu-CAGGAg -5'
9117 3' -57.3 NC_002512.2 + 96651 0.66 0.935646
Target:  5'- cGGGGCG-CCGcCGccCUCCc-GUCCUCg -3'
miRNA:   3'- -CCUCGCaGGCuGCu-GAGGcuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 155902 0.66 0.930868
Target:  5'- cGGGGacgaGUCCGGCG---CCGAcgcGUCCUCc -3'
miRNA:   3'- -CCUCg---CAGGCUGCugaGGCU---CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 223219 0.66 0.935646
Target:  5'- cGGAGCGcgucCCGGcCGGCUCggugcacuuCGAcUCCUCg -3'
miRNA:   3'- -CCUCGCa---GGCU-GCUGAG---------GCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 222367 0.66 0.930868
Target:  5'- cGGGGCcgccuuccCCGGCgGGCUCUGGcUCCUCa -3'
miRNA:   3'- -CCUCGca------GGCUG-CUGAGGCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 158937 0.66 0.948692
Target:  5'- gGGGGCG-CCGGCGGcCUCUcGGUCa-- -3'
miRNA:   3'- -CCUCGCaGGCUGCU-GAGGcUCAGgag -5'
9117 3' -57.3 NC_002512.2 + 4555 0.66 0.930868
Target:  5'- cGGcGCGaCCGACGGCUgCGGcGUCUg- -3'
miRNA:   3'- -CCuCGCaGGCUGCUGAgGCU-CAGGag -5'
9117 3' -57.3 NC_002512.2 + 111851 0.66 0.930868
Target:  5'- aGAGCG-CCGcCGuCgCCGcGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCuGCuGaGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 186371 0.66 0.935646
Target:  5'- cGGGGaCGUcaugugucuguaCCGACcgcugcaGCUCCGcGUCCUCg -3'
miRNA:   3'- -CCUC-GCA------------GGCUGc------UGAGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 200484 0.66 0.935178
Target:  5'- aGGAGuCGUgCGAgGGCggcguccUCCGAccggggcucGUCCUCa -3'
miRNA:   3'- -CCUC-GCAgGCUgCUG-------AGGCU---------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 134722 0.66 0.930868
Target:  5'- uGGGgG-CCGGgggaaGGCUCCG-GUCCUCg -3'
miRNA:   3'- cCUCgCaGGCUg----CUGAGGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 58523 0.66 0.930868
Target:  5'- cGGAGCGUCCGcuGCGACacucccaauagCUGAGgagauaCUCc -3'
miRNA:   3'- -CCUCGCAGGC--UGCUGa----------GGCUCag----GAG- -5'
9117 3' -57.3 NC_002512.2 + 107085 0.67 0.909599
Target:  5'- gGGGGCGgucgggucggUCGGCGGC-CCGuccuccucGUCCUCg -3'
miRNA:   3'- -CCUCGCa---------GGCUGCUGaGGCu-------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 126402 0.67 0.89768
Target:  5'- cGAGCgGUCCG-CGGCcgccgCCGAgacccgagccgcGUCCUCg -3'
miRNA:   3'- cCUCG-CAGGCuGCUGa----GGCU------------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 116704 0.67 0.915239
Target:  5'- cGGAGCGgaCGGCGACgCCGGucgcGUCC-Cg -3'
miRNA:   3'- -CCUCGCagGCUGCUGaGGCU----CAGGaG- -5'
9117 3' -57.3 NC_002512.2 + 59030 0.67 0.920665
Target:  5'- aGGGCGUCgaGGCGACacucgacgUCCGGGUCg-- -3'
miRNA:   3'- cCUCGCAGg-CUGCUG--------AGGCUCAGgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.