miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 3' -57.3 NC_002512.2 + 55325 0.67 0.903745
Target:  5'- cGAGCGUCCagaacccgGugGaacGCUCCuGGUUCUCg -3'
miRNA:   3'- cCUCGCAGG--------CugC---UGAGGcUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 57038 0.69 0.849582
Target:  5'- cGGAggccGCGUCCGACGAC-CgGGGggcgCCg- -3'
miRNA:   3'- -CCU----CGCAGGCUGCUGaGgCUCa---GGag -5'
9117 3' -57.3 NC_002512.2 + 58523 0.66 0.930868
Target:  5'- cGGAGCGUCCGcuGCGACacucccaauagCUGAGgagauaCUCc -3'
miRNA:   3'- -CCUCGCAGGC--UGCUGa----------GGCUCag----GAG- -5'
9117 3' -57.3 NC_002512.2 + 59030 0.67 0.920665
Target:  5'- aGGGCGUCgaGGCGACacucgacgUCCGGGUCg-- -3'
miRNA:   3'- cCUCGCAGg-CUGCUG--------AGGCUCAGgag -5'
9117 3' -57.3 NC_002512.2 + 64936 0.66 0.944556
Target:  5'- -cGGgGUCCaGcACGuACUCCcGGUCCUCg -3'
miRNA:   3'- ccUCgCAGG-C-UGC-UGAGGcUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 65137 0.7 0.775311
Target:  5'- -cGGCGUCCauGGCGGCgcgcuaCCG-GUCCUCg -3'
miRNA:   3'- ccUCGCAGG--CUGCUGa-----GGCuCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 72813 0.68 0.874141
Target:  5'- uGGGCG-CCGGCGAccccggaccccgggaCgcccgccuugCCGGGUCCUCg -3'
miRNA:   3'- cCUCGCaGGCUGCU---------------Ga---------GGCUCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 74204 0.68 0.864292
Target:  5'- cGGcGaCGUCCGugGGCUCgCG-GUCC-Cg -3'
miRNA:   3'- -CCuC-GCAGGCugCUGAG-GCuCAGGaG- -5'
9117 3' -57.3 NC_002512.2 + 74599 0.66 0.944556
Target:  5'- cGGGGCccUCCGuCGGCUC-GAGccgCCUCg -3'
miRNA:   3'- -CCUCGc-AGGCuGCUGAGgCUCa--GGAG- -5'
9117 3' -57.3 NC_002512.2 + 77576 0.67 0.903745
Target:  5'- cGGGCGUCCGAgCcACgCCGAGcggucCCUCg -3'
miRNA:   3'- cCUCGCAGGCU-GcUGaGGCUCa----GGAG- -5'
9117 3' -57.3 NC_002512.2 + 79502 0.66 0.935646
Target:  5'- gGGAGgGgg-GACGccucucACUCCGAGUCCa- -3'
miRNA:   3'- -CCUCgCaggCUGC------UGAGGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 80224 0.67 0.909599
Target:  5'- cGGAGCGgauagggcagcUCCggGACGugcgggccggGCUCCGugcGGUCCUCc -3'
miRNA:   3'- -CCUCGC-----------AGG--CUGC----------UGAGGC---UCAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 80416 0.67 0.925874
Target:  5'- uGGuGGCGUggcugUCGGCGGCgucCCGGGUCCc- -3'
miRNA:   3'- -CC-UCGCA-----GGCUGCUGa--GGCUCAGGag -5'
9117 3' -57.3 NC_002512.2 + 80640 0.69 0.818073
Target:  5'- -cGGcCGUCCGcgGCGGCggcgCCGGGUCCgUCg -3'
miRNA:   3'- ccUC-GCAGGC--UGCUGa---GGCUCAGG-AG- -5'
9117 3' -57.3 NC_002512.2 + 83801 0.7 0.781493
Target:  5'- aGGAccGCGUCgggcgcgccggcggCGGCGGCUCCGGGcCCg- -3'
miRNA:   3'- -CCU--CGCAG--------------GCUGCUGAGGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 86556 0.68 0.884927
Target:  5'- -cGGCGUCCGACGugUgUGGugaccuugguccGUCCUUc -3'
miRNA:   3'- ccUCGCAGGCUGCugAgGCU------------CAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 90195 0.66 0.941973
Target:  5'- aGGAGCGguaaCCaGACGACggucgucuucaggaCCGAGUCgaCg -3'
miRNA:   3'- -CCUCGCa---GG-CUGCUGa-------------GGCUCAGgaG- -5'
9117 3' -57.3 NC_002512.2 + 90487 0.67 0.920665
Target:  5'- cGGGGCGUCCu-CGACgggaucggggCCGAGgCCg- -3'
miRNA:   3'- -CCUCGCAGGcuGCUGa---------GGCUCaGGag -5'
9117 3' -57.3 NC_002512.2 + 94862 0.67 0.925874
Target:  5'- cGAGaucCGUCCGcCGGC-CCGAaUCCUCc -3'
miRNA:   3'- cCUC---GCAGGCuGCUGaGGCUcAGGAG- -5'
9117 3' -57.3 NC_002512.2 + 95249 0.69 0.818073
Target:  5'- gGGGGCGUCCGgagggccgcGCGGCUCCugaacggcgGGGUCg-- -3'
miRNA:   3'- -CCUCGCAGGC---------UGCUGAGG---------CUCAGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.