miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9119 5' -59.3 NC_002512.2 + 96405 0.71 0.632926
Target:  5'- aGGGCCGAGUgGUUCUcGGGgaggaagcaGUGGACg -3'
miRNA:   3'- -UCUGGCUCGgCAGGA-CCCa--------CACCUGg -5'
9119 5' -59.3 NC_002512.2 + 103252 0.7 0.690649
Target:  5'- gGGACCgccuGAGCUgGUCCUuGGUGUaGACCa -3'
miRNA:   3'- -UCUGG----CUCGG-CAGGAcCCACAcCUGG- -5'
9119 5' -59.3 NC_002512.2 + 105308 0.66 0.883144
Target:  5'- aAGAacaCG-GCCGUCa-GGGagccGUGGGCCg -3'
miRNA:   3'- -UCUg--GCuCGGCAGgaCCCa---CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 107681 1.12 0.001692
Target:  5'- cAGACCGAGCCGUCCUGGGUGUGGACCa -3'
miRNA:   3'- -UCUGGCUCGGCAGGACCCACACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 108945 0.7 0.690649
Target:  5'- uGGCgGuGUCGuUCCUGGugugcGUGUGGGCCc -3'
miRNA:   3'- uCUGgCuCGGC-AGGACC-----CACACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 113423 0.67 0.840189
Target:  5'- -cGCCGGGaucaccgccCCGUCCccgagcUGGGUggcgaucagGUGGACCa -3'
miRNA:   3'- ucUGGCUC---------GGCAGG------ACCCA---------CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 115732 0.67 0.808115
Target:  5'- aGGACCGGGCCcgggucGUCCUcugccGGcUGcuccUGGACCg -3'
miRNA:   3'- -UCUGGCUCGG------CAGGA-----CCcAC----ACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 117994 0.7 0.661884
Target:  5'- cGGCCGcucGUCGUCCaugcacGGG-GUGGACCc -3'
miRNA:   3'- uCUGGCu--CGGCAGGa-----CCCaCACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 119032 0.69 0.70016
Target:  5'- cGGGCCG-GCCGUCgUGGGccUGUucGCCg -3'
miRNA:   3'- -UCUGGCuCGGCAGgACCC--ACAccUGG- -5'
9119 5' -59.3 NC_002512.2 + 119403 0.68 0.755889
Target:  5'- aGGGCCGcguGCCGcugCUcGGGagcGUGGACCg -3'
miRNA:   3'- -UCUGGCu--CGGCa--GGaCCCa--CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 121205 0.66 0.876455
Target:  5'- uGGCCGAcagcgcccucGUCGUCggcgGGGaguacaUGUGGACCg -3'
miRNA:   3'- uCUGGCU----------CGGCAGga--CCC------ACACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 121399 0.72 0.565629
Target:  5'- cGGACgGAGCCGcgCCUGGcGUGgagGGAg- -3'
miRNA:   3'- -UCUGgCUCGGCa-GGACC-CACa--CCUgg -5'
9119 5' -59.3 NC_002512.2 + 124694 0.71 0.632926
Target:  5'- gGGAuCCGGgcgcacGCCGUCCUGGGgcgcGUGcACCu -3'
miRNA:   3'- -UCU-GGCU------CGGCAGGACCCa---CACcUGG- -5'
9119 5' -59.3 NC_002512.2 + 126542 0.68 0.787751
Target:  5'- cGACCGuGCCGUCCgccccGGGcuacgccgcccGGGCCu -3'
miRNA:   3'- uCUGGCuCGGCAGGa----CCCaca--------CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 130463 0.76 0.336526
Target:  5'- cGGCUGAG-CGUCCUGGGUcGgucgGGGCCc -3'
miRNA:   3'- uCUGGCUCgGCAGGACCCA-Ca---CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 131071 0.66 0.876455
Target:  5'- gAGGCCGAuccgucgcuccgGCCG-CCgGGGUaccuggacGUGGugCg -3'
miRNA:   3'- -UCUGGCU------------CGGCaGGaCCCA--------CACCugG- -5'
9119 5' -59.3 NC_002512.2 + 134992 0.66 0.862499
Target:  5'- cGACCGGGacgccuacccguUCGUCCUGGaGgauucGGGCCg -3'
miRNA:   3'- uCUGGCUC------------GGCAGGACC-Caca--CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 135140 0.74 0.430101
Target:  5'- aGGGCCGGGCCGcCCUGGuGaUGcUGG-CCa -3'
miRNA:   3'- -UCUGGCUCGGCaGGACC-C-AC-ACCuGG- -5'
9119 5' -59.3 NC_002512.2 + 152188 0.67 0.824464
Target:  5'- aGGACCGGG--GUCCUcGGaGaGUGGACCc -3'
miRNA:   3'- -UCUGGCUCggCAGGA-CC-CaCACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 157366 0.69 0.728358
Target:  5'- gAGGuCCGGGCCG-CC-GGGcagGGACCg -3'
miRNA:   3'- -UCU-GGCUCGGCaGGaCCCacaCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.