miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9119 5' -59.3 NC_002512.2 + 10464 0.7 0.652243
Target:  5'- gAGGCCGccGCCGcCCcGGGcGUGGGCg -3'
miRNA:   3'- -UCUGGCu-CGGCaGGaCCCaCACCUGg -5'
9119 5' -59.3 NC_002512.2 + 14767 0.67 0.847802
Target:  5'- cGGACCccGGCCGUUCUGGcG-GUcGGCCg -3'
miRNA:   3'- -UCUGGc-UCGGCAGGACC-CaCAcCUGG- -5'
9119 5' -59.3 NC_002512.2 + 16679 0.69 0.719023
Target:  5'- cGACCcGGCgGUCCcagaccaGGGUGUGGcgguaGCCg -3'
miRNA:   3'- uCUGGcUCGgCAGGa------CCCACACC-----UGG- -5'
9119 5' -59.3 NC_002512.2 + 36397 0.73 0.509468
Target:  5'- cGACCGAgGUCGUCCaGGccGUcGUGGGCCu -3'
miRNA:   3'- uCUGGCU-CGGCAGGaCC--CA-CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 41796 0.66 0.865351
Target:  5'- cGACCGAGUugccguucucgcggaCGacgaugUCCUGGcUGUGGACg -3'
miRNA:   3'- uCUGGCUCG---------------GC------AGGACCcACACCUGg -5'
9119 5' -59.3 NC_002512.2 + 41900 0.66 0.862499
Target:  5'- aGGuCCGAGCUGUCCUGacgaugaacuuGGUGagcucgcgguUGGAgCu -3'
miRNA:   3'- -UCuGGCUCGGCAGGAC-----------CCAC----------ACCUgG- -5'
9119 5' -59.3 NC_002512.2 + 45104 0.67 0.840189
Target:  5'- gAGGcCCGGGCCacGUCCUcGGG-GUcgacgaccacGGGCCg -3'
miRNA:   3'- -UCU-GGCUCGG--CAGGA-CCCaCA----------CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 47458 0.66 0.862499
Target:  5'- gAGGCCGAgGCCGaguUCCgcaaGGcgGUGGACa -3'
miRNA:   3'- -UCUGGCU-CGGC---AGGac--CCa-CACCUGg -5'
9119 5' -59.3 NC_002512.2 + 49738 0.66 0.879154
Target:  5'- gGGACgGAgGCCGUCCUGGaccgcccgacgcUGGACg -3'
miRNA:   3'- -UCUGgCU-CGGCAGGACCcac---------ACCUGg -5'
9119 5' -59.3 NC_002512.2 + 51059 0.72 0.537295
Target:  5'- cGAcCCGAGCaCGUCC-GGGcgcUGUcGGACCa -3'
miRNA:   3'- uCU-GGCUCG-GCAGGaCCC---ACA-CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 51650 0.7 0.681094
Target:  5'- gAGACCGcGCCGUCCccGGaGacccUGGACCu -3'
miRNA:   3'- -UCUGGCuCGGCAGGa-CC-Cac--ACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 71263 0.68 0.755889
Target:  5'- gGGuCgGAGCCGUCCaGGGccgccaGGACCc -3'
miRNA:   3'- -UCuGgCUCGGCAGGaCCCaca---CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 72943 0.7 0.671503
Target:  5'- cGGCCGGGCCa-CCaGGGUG-GcGACCg -3'
miRNA:   3'- uCUGGCUCGGcaGGaCCCACaC-CUGG- -5'
9119 5' -59.3 NC_002512.2 + 79121 0.67 0.816364
Target:  5'- -cGCCGAgucgGCCGUCaaucacGGGUcUGGGCCg -3'
miRNA:   3'- ucUGGCU----CGGCAGga----CCCAcACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 82325 0.67 0.832408
Target:  5'- aGGGCCGcgGGCCGcCCcggcGGGUagcgGUGGGCg -3'
miRNA:   3'- -UCUGGC--UCGGCaGGa---CCCA----CACCUGg -5'
9119 5' -59.3 NC_002512.2 + 87272 0.67 0.840189
Target:  5'- gGGAgCGAacacGCgGUCgUGGG-GUGGACg -3'
miRNA:   3'- -UCUgGCU----CGgCAGgACCCaCACCUGg -5'
9119 5' -59.3 NC_002512.2 + 88495 0.66 0.876455
Target:  5'- uGGAuCCGcAGCCGcUCC-GGGUGcaUGG-CCg -3'
miRNA:   3'- -UCU-GGC-UCGGC-AGGaCCCAC--ACCuGG- -5'
9119 5' -59.3 NC_002512.2 + 90484 0.67 0.840189
Target:  5'- -cACCGGGgCGUCCUcgacGGGaucgGGGCCg -3'
miRNA:   3'- ucUGGCUCgGCAGGA----CCCaca-CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 90942 0.69 0.719023
Target:  5'- cGGCCGccGCCGUCgUGGuG-GUGGugCu -3'
miRNA:   3'- uCUGGCu-CGGCAGgACC-CaCACCugG- -5'
9119 5' -59.3 NC_002512.2 + 95689 0.66 0.855241
Target:  5'- -cGCCGGGCC-UCCggcGGGgacgGgGGGCCg -3'
miRNA:   3'- ucUGGCUCGGcAGGa--CCCa---CaCCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.