miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9119 5' -59.3 NC_002512.2 + 107681 1.12 0.001692
Target:  5'- cAGACCGAGCCGUCCUGGGUGUGGACCa -3'
miRNA:   3'- -UCUGGCUCGGCAGGACCCACACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 130463 0.76 0.336526
Target:  5'- cGGCUGAG-CGUCCUGGGUcGgucgGGGCCc -3'
miRNA:   3'- uCUGGCUCgGCAGGACCCA-Ca---CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 225797 0.76 0.373653
Target:  5'- cGGCCGGGCCGcgggcggCC-GGGUGgccugGGACCu -3'
miRNA:   3'- uCUGGCUCGGCa------GGaCCCACa----CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 186972 0.75 0.397225
Target:  5'- --cCCGGGCCGUCCUGgcGGUGcgcaUGGGCUa -3'
miRNA:   3'- ucuGGCUCGGCAGGAC--CCAC----ACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 135140 0.74 0.430101
Target:  5'- aGGGCCGGGCCGcCCUGGuGaUGcUGG-CCa -3'
miRNA:   3'- -UCUGGCUCGGCaGGACC-C-AC-ACCuGG- -5'
9119 5' -59.3 NC_002512.2 + 36397 0.73 0.509468
Target:  5'- cGACCGAgGUCGUCCaGGccGUcGUGGGCCu -3'
miRNA:   3'- uCUGGCU-CGGCAGGaCC--CA-CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 51059 0.72 0.537295
Target:  5'- cGAcCCGAGCaCGUCC-GGGcgcUGUcGGACCa -3'
miRNA:   3'- uCU-GGCUCG-GCAGGaCCC---ACA-CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 222195 0.72 0.554243
Target:  5'- cGGCCGGcGUCGUCCguuucuucgucgGGGUGgccgucgGGGCCg -3'
miRNA:   3'- uCUGGCU-CGGCAGGa-----------CCCACa------CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 220302 0.72 0.556136
Target:  5'- -cGCCGAGCCG-CCgGGGggccggGGGCCg -3'
miRNA:   3'- ucUGGCUCGGCaGGaCCCaca---CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 121399 0.72 0.565629
Target:  5'- cGGACgGAGCCGcgCCUGGcGUGgagGGAg- -3'
miRNA:   3'- -UCUGgCUCGGCa-GGACC-CACa--CCUgg -5'
9119 5' -59.3 NC_002512.2 + 124694 0.71 0.632926
Target:  5'- gGGAuCCGGgcgcacGCCGUCCUGGGgcgcGUGcACCu -3'
miRNA:   3'- -UCU-GGCU------CGGCAGGACCCa---CACcUGG- -5'
9119 5' -59.3 NC_002512.2 + 96405 0.71 0.632926
Target:  5'- aGGGCCGAGUgGUUCUcGGGgaggaagcaGUGGACg -3'
miRNA:   3'- -UCUGGCUCGgCAGGA-CCCa--------CACCUGg -5'
9119 5' -59.3 NC_002512.2 + 10464 0.7 0.652243
Target:  5'- gAGGCCGccGCCGcCCcGGGcGUGGGCg -3'
miRNA:   3'- -UCUGGCu-CGGCaGGaCCCaCACCUGg -5'
9119 5' -59.3 NC_002512.2 + 117994 0.7 0.661884
Target:  5'- cGGCCGcucGUCGUCCaugcacGGG-GUGGACCc -3'
miRNA:   3'- uCUGGCu--CGGCAGGa-----CCCaCACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 72943 0.7 0.671503
Target:  5'- cGGCCGGGCCa-CCaGGGUG-GcGACCg -3'
miRNA:   3'- uCUGGCUCGGcaGGaCCCACaC-CUGG- -5'
9119 5' -59.3 NC_002512.2 + 189580 0.7 0.681094
Target:  5'- cGACCGGGCCG-CC-GGGUccucgGGACg -3'
miRNA:   3'- uCUGGCUCGGCaGGaCCCAca---CCUGg -5'
9119 5' -59.3 NC_002512.2 + 51650 0.7 0.681094
Target:  5'- gAGACCGcGCCGUCCccGGaGacccUGGACCu -3'
miRNA:   3'- -UCUGGCuCGGCAGGa-CC-Cac--ACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 108945 0.7 0.690649
Target:  5'- uGGCgGuGUCGuUCCUGGugugcGUGUGGGCCc -3'
miRNA:   3'- uCUGgCuCGGC-AGGACC-----CACACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 103252 0.7 0.690649
Target:  5'- gGGACCgccuGAGCUgGUCCUuGGUGUaGACCa -3'
miRNA:   3'- -UCUGG----CUCGG-CAGGAcCCACAcCUGG- -5'
9119 5' -59.3 NC_002512.2 + 119032 0.69 0.70016
Target:  5'- cGGGCCG-GCCGUCgUGGGccUGUucGCCg -3'
miRNA:   3'- -UCUGGCuCGGCAGgACCC--ACAccUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.