Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9119 | 5' | -59.3 | NC_002512.2 | + | 36397 | 0.73 | 0.509468 |
Target: 5'- cGACCGAgGUCGUCCaGGccGUcGUGGGCCu -3' miRNA: 3'- uCUGGCU-CGGCAGGaCC--CA-CACCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 47458 | 0.66 | 0.862499 |
Target: 5'- gAGGCCGAgGCCGaguUCCgcaaGGcgGUGGACa -3' miRNA: 3'- -UCUGGCU-CGGC---AGGac--CCa-CACCUGg -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 14767 | 0.67 | 0.847802 |
Target: 5'- cGGACCccGGCCGUUCUGGcG-GUcGGCCg -3' miRNA: 3'- -UCUGGc-UCGGCAGGACC-CaCAcCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 113423 | 0.67 | 0.840189 |
Target: 5'- -cGCCGGGaucaccgccCCGUCCccgagcUGGGUggcgaucagGUGGACCa -3' miRNA: 3'- ucUGGCUC---------GGCAGG------ACCCA---------CACCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 87272 | 0.67 | 0.840189 |
Target: 5'- gGGAgCGAacacGCgGUCgUGGG-GUGGACg -3' miRNA: 3'- -UCUgGCU----CGgCAGgACCCaCACCUGg -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 45104 | 0.67 | 0.840189 |
Target: 5'- gAGGcCCGGGCCacGUCCUcGGG-GUcgacgaccacGGGCCg -3' miRNA: 3'- -UCU-GGCUCGG--CAGGA-CCCaCA----------CCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 82325 | 0.67 | 0.832408 |
Target: 5'- aGGGCCGcgGGCCGcCCcggcGGGUagcgGUGGGCg -3' miRNA: 3'- -UCUGGC--UCGGCaGGa---CCCA----CACCUGg -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 79121 | 0.67 | 0.816364 |
Target: 5'- -cGCCGAgucgGCCGUCaaucacGGGUcUGGGCCg -3' miRNA: 3'- ucUGGCU----CGGCAGga----CCCAcACCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 115732 | 0.67 | 0.808115 |
Target: 5'- aGGACCGGGCCcgggucGUCCUcugccGGcUGcuccUGGACCg -3' miRNA: 3'- -UCUGGCUCGG------CAGGA-----CCcAC----ACCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 126542 | 0.68 | 0.787751 |
Target: 5'- cGACCGuGCCGUCCgccccGGGcuacgccgcccGGGCCu -3' miRNA: 3'- uCUGGCuCGGCAGGa----CCCaca--------CCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 119403 | 0.68 | 0.755889 |
Target: 5'- aGGGCCGcguGCCGcugCUcGGGagcGUGGACCg -3' miRNA: 3'- -UCUGGCu--CGGCa--GGaCCCa--CACCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 71263 | 0.68 | 0.755889 |
Target: 5'- gGGuCgGAGCCGUCCaGGGccgccaGGACCc -3' miRNA: 3'- -UCuGgCUCGGCAGGaCCCaca---CCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 90942 | 0.69 | 0.719023 |
Target: 5'- cGGCCGccGCCGUCgUGGuG-GUGGugCu -3' miRNA: 3'- uCUGGCu-CGGCAGgACC-CaCACCugG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 16679 | 0.69 | 0.719023 |
Target: 5'- cGACCcGGCgGUCCcagaccaGGGUGUGGcgguaGCCg -3' miRNA: 3'- uCUGGcUCGgCAGGa------CCCACACC-----UGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 119032 | 0.69 | 0.70016 |
Target: 5'- cGGGCCG-GCCGUCgUGGGccUGUucGCCg -3' miRNA: 3'- -UCUGGCuCGGCAGgACCC--ACAccUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 51650 | 0.7 | 0.681094 |
Target: 5'- gAGACCGcGCCGUCCccGGaGacccUGGACCu -3' miRNA: 3'- -UCUGGCuCGGCAGGa-CC-Cac--ACCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 72943 | 0.7 | 0.671503 |
Target: 5'- cGGCCGGGCCa-CCaGGGUG-GcGACCg -3' miRNA: 3'- uCUGGCUCGGcaGGaCCCACaC-CUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 10464 | 0.7 | 0.652243 |
Target: 5'- gAGGCCGccGCCGcCCcGGGcGUGGGCg -3' miRNA: 3'- -UCUGGCu-CGGCaGGaCCCaCACCUGg -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 51059 | 0.72 | 0.537295 |
Target: 5'- cGAcCCGAGCaCGUCC-GGGcgcUGUcGGACCa -3' miRNA: 3'- uCU-GGCUCG-GCAGGaCCC---ACA-CCUGG- -5' |
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9119 | 5' | -59.3 | NC_002512.2 | + | 130463 | 0.76 | 0.336526 |
Target: 5'- cGGCUGAG-CGUCCUGGGUcGgucgGGGCCc -3' miRNA: 3'- uCUGGCUCgGCAGGACCCA-Ca---CCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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