miRNA display CGI


Results 41 - 60 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 3' -66 NC_002512.2 + 95777 0.66 0.570176
Target:  5'- gGaCGgGGGCGuCCGagcgguaggcGCCGGGgCGCGGa -3'
miRNA:   3'- aC-GUgCCCGU-GGU----------CGGCCCgGCGCCg -5'
9120 3' -66 NC_002512.2 + 196182 0.66 0.570176
Target:  5'- aGCccgaGgGGGCGaCGGCCGGGuCCcUGGCg -3'
miRNA:   3'- aCG----UgCCCGUgGUCGGCCC-GGcGCCG- -5'
9120 3' -66 NC_002512.2 + 192601 0.66 0.570176
Target:  5'- cUGCuGCGGcGCGCgCGG-CGGGCgacgGCGGCc -3'
miRNA:   3'- -ACG-UGCC-CGUG-GUCgGCCCGg---CGCCG- -5'
9120 3' -66 NC_002512.2 + 131836 0.66 0.570176
Target:  5'- aGC-CGGGaggaGCCGGgCaGGcuagagaugacGCCGCGGCg -3'
miRNA:   3'- aCGuGCCCg---UGGUCgG-CC-----------CGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 110564 0.66 0.570176
Target:  5'- cGCGCGGGagguCCuGCCGGGUCa-GGa -3'
miRNA:   3'- aCGUGCCCgu--GGuCGGCCCGGcgCCg -5'
9120 3' -66 NC_002512.2 + 136588 0.66 0.570176
Target:  5'- gUGCGCGGGUuggacgcguACaGGUagCGGGCCGCGc- -3'
miRNA:   3'- -ACGUGCCCG---------UGgUCG--GCCCGGCGCcg -5'
9120 3' -66 NC_002512.2 + 111708 0.66 0.570176
Target:  5'- aGCAUGGGCugUagaAGCuCGGGuuGUGu- -3'
miRNA:   3'- aCGUGCCCGugG---UCG-GCCCggCGCcg -5'
9120 3' -66 NC_002512.2 + 92657 0.66 0.569253
Target:  5'- cGCGCGGauccgggacggccGC-CCGcGCCGGGCgCGCcGCc -3'
miRNA:   3'- aCGUGCC-------------CGuGGU-CGGCCCG-GCGcCG- -5'
9120 3' -66 NC_002512.2 + 203102 0.66 0.569253
Target:  5'- aUGCACgucucgaaggccaGGGCGUCGGCCGaGUCGUGGg -3'
miRNA:   3'- -ACGUG-------------CCCGUGGUCGGCcCGGCGCCg -5'
9120 3' -66 NC_002512.2 + 129979 0.66 0.560965
Target:  5'- --gGCGGGCccCCGGCgcccucgaCGGGCCGCGc- -3'
miRNA:   3'- acgUGCCCGu-GGUCG--------GCCCGGCGCcg -5'
9120 3' -66 NC_002512.2 + 108998 0.66 0.560965
Target:  5'- cUGCuCGucGGCGCCGGCggcgucguccugCGGacCCGCGGCg -3'
miRNA:   3'- -ACGuGC--CCGUGGUCG------------GCCc-GGCGCCG- -5'
9120 3' -66 NC_002512.2 + 43453 0.66 0.560965
Target:  5'- gUGUACaggaGGC-CCAGCC-GGCCGagcaCGGCg -3'
miRNA:   3'- -ACGUGc---CCGuGGUCGGcCCGGC----GCCG- -5'
9120 3' -66 NC_002512.2 + 53312 0.66 0.560965
Target:  5'- cGaCACGGuGCuggccgugaACCGGCUGGuGaCgGCGGCg -3'
miRNA:   3'- aC-GUGCC-CG---------UGGUCGGCC-C-GgCGCCG- -5'
9120 3' -66 NC_002512.2 + 44478 0.66 0.560965
Target:  5'- ----aGGGCGCCccggGGCCGGGCgGagaagaCGGCc -3'
miRNA:   3'- acgugCCCGUGG----UCGGCCCGgC------GCCG- -5'
9120 3' -66 NC_002512.2 + 8827 0.66 0.560965
Target:  5'- cGC-CGGaGCuuggGCCAGaCGGGCUcgcugccggGCGGCa -3'
miRNA:   3'- aCGuGCC-CG----UGGUCgGCCCGG---------CGCCG- -5'
9120 3' -66 NC_002512.2 + 89718 0.66 0.560965
Target:  5'- aGCA-GGuuACCgaAGUCgGGGUCGCGGCa -3'
miRNA:   3'- aCGUgCCcgUGG--UCGG-CCCGGCGCCG- -5'
9120 3' -66 NC_002512.2 + 228139 0.66 0.560965
Target:  5'- cGCcgACGGGCGCgAGCucagguccacgCGGaGCCggagcgggaGCGGCa -3'
miRNA:   3'- aCG--UGCCCGUGgUCG-----------GCC-CGG---------CGCCG- -5'
9120 3' -66 NC_002512.2 + 120869 0.66 0.560965
Target:  5'- cGcCGCGGGUccgcaggacgacGCC-GCCGGcGCCGaCGaGCa -3'
miRNA:   3'- aC-GUGCCCG------------UGGuCGGCC-CGGC-GC-CG- -5'
9120 3' -66 NC_002512.2 + 205005 0.66 0.560965
Target:  5'- gGCGgGGGCGaaacgacgcgccUCGGUCGGGgCCGCGuccGCc -3'
miRNA:   3'- aCGUgCCCGU------------GGUCGGCCC-GGCGC---CG- -5'
9120 3' -66 NC_002512.2 + 102326 0.66 0.560965
Target:  5'- cGU-CGGGCcucccggacgACgAGCCGGGuCCG-GGCg -3'
miRNA:   3'- aCGuGCCCG----------UGgUCGGCCC-GGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.