Results 81 - 100 of 183 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 47221 | 0.67 | 0.948904 |
Target: 5'- -aACCGcaucaaggaGUUCGGCgaggcCGAGACGCAGg -3' miRNA: 3'- agUGGCag-------CAGGCCGa----GCUUUGCGUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 117742 | 0.67 | 0.948904 |
Target: 5'- cUCGCCGUCGaCCGcCUCGucuuCGCGc -3' miRNA: 3'- -AGUGGCAGCaGGCcGAGCuuu-GCGUc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 147524 | 0.67 | 0.948904 |
Target: 5'- cCGCCGaUC--CCGGCgCGAGGCGCGa -3' miRNA: 3'- aGUGGC-AGcaGGCCGaGCUUUGCGUc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 219262 | 0.67 | 0.944707 |
Target: 5'- -gGCUGcUCGUCCGGCagGggGCGgAc -3' miRNA: 3'- agUGGC-AGCAGGCCGagCuuUGCgUc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 185470 | 0.67 | 0.944707 |
Target: 5'- uUCGCCGUgGUCCuGC-CGc--CGCAGg -3' miRNA: 3'- -AGUGGCAgCAGGcCGaGCuuuGCGUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 226402 | 0.67 | 0.944707 |
Target: 5'- gCGCCGggacccgucgCGUCCGcGuCUCcGGACGCGGg -3' miRNA: 3'- aGUGGCa---------GCAGGC-C-GAGcUUUGCGUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 206558 | 0.67 | 0.944707 |
Target: 5'- aCACCGcCGg-CGGCcCGggGCGcCAGa -3' miRNA: 3'- aGUGGCaGCagGCCGaGCuuUGC-GUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 121825 | 0.67 | 0.944707 |
Target: 5'- aUCGCCGUCGgCCGGa-CGggGgGgAGg -3' miRNA: 3'- -AGUGGCAGCaGGCCgaGCuuUgCgUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 154216 | 0.67 | 0.944707 |
Target: 5'- cCAUCGUCGUcucucgcgcggCCGGCg-GAAACGUAu -3' miRNA: 3'- aGUGGCAGCA-----------GGCCGagCUUUGCGUc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 111271 | 0.67 | 0.944275 |
Target: 5'- gCACCGUCGUCuccauguCGGC-CGc--CGCGGg -3' miRNA: 3'- aGUGGCAGCAG-------GCCGaGCuuuGCGUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 70229 | 0.68 | 0.940291 |
Target: 5'- aCACCGgcUCGgugCCGGCgcucgucugCGAGAauCGCGGg -3' miRNA: 3'- aGUGGC--AGCa--GGCCGa--------GCUUU--GCGUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 39281 | 0.68 | 0.940291 |
Target: 5'- -gAUCGUCGagCCGGCU-GAucCGCAGg -3' miRNA: 3'- agUGGCAGCa-GGCCGAgCUuuGCGUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 84539 | 0.68 | 0.940291 |
Target: 5'- -aGCCGgCGUCgGGCggcgcggCGAGGCGCu- -3' miRNA: 3'- agUGGCaGCAGgCCGa------GCUUUGCGuc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 105770 | 0.68 | 0.940291 |
Target: 5'- uUCGCCG-CGUuacCCGGCggaccCGGAaagGCGCGGc -3' miRNA: 3'- -AGUGGCaGCA---GGCCGa----GCUU---UGCGUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 82937 | 0.68 | 0.939838 |
Target: 5'- cCGCCGUCGUCgcgcuucaCGGCcagcaggUCGcgGCGCAc -3' miRNA: 3'- aGUGGCAGCAG--------GCCG-------AGCuuUGCGUc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 104276 | 0.68 | 0.939382 |
Target: 5'- cCGCCGgcgucuuucucgCGUCCGGCggCGGGAgGCu- -3' miRNA: 3'- aGUGGCa-----------GCAGGCCGa-GCUUUgCGuc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 91056 | 0.68 | 0.935654 |
Target: 5'- cCGCCuGUCGUCCGcCUgGAGGuCGCAc -3' miRNA: 3'- aGUGG-CAGCAGGCcGAgCUUU-GCGUc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 81633 | 0.68 | 0.935654 |
Target: 5'- gUCGCCa-CGUCCaGGCUCG--GCGCGu -3' miRNA: 3'- -AGUGGcaGCAGG-CCGAGCuuUGCGUc -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 25052 | 0.68 | 0.93129 |
Target: 5'- cCGCCGUCGUCCucccggacGGagccgccgcgccccCGGGACGCGGa -3' miRNA: 3'- aGUGGCAGCAGG--------CCga------------GCUUUGCGUC- -5' |
|||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 108177 | 0.68 | 0.930794 |
Target: 5'- aUCACgGUCGccCCGGUggCGAGGCGUu- -3' miRNA: 3'- -AGUGgCAGCa-GGCCGa-GCUUUGCGuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home