miRNA display CGI


Results 81 - 100 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 47221 0.67 0.948904
Target:  5'- -aACCGcaucaaggaGUUCGGCgaggcCGAGACGCAGg -3'
miRNA:   3'- agUGGCag-------CAGGCCGa----GCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 117742 0.67 0.948904
Target:  5'- cUCGCCGUCGaCCGcCUCGucuuCGCGc -3'
miRNA:   3'- -AGUGGCAGCaGGCcGAGCuuu-GCGUc -5'
9120 5' -55.4 NC_002512.2 + 147524 0.67 0.948904
Target:  5'- cCGCCGaUC--CCGGCgCGAGGCGCGa -3'
miRNA:   3'- aGUGGC-AGcaGGCCGaGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 219262 0.67 0.944707
Target:  5'- -gGCUGcUCGUCCGGCagGggGCGgAc -3'
miRNA:   3'- agUGGC-AGCAGGCCGagCuuUGCgUc -5'
9120 5' -55.4 NC_002512.2 + 185470 0.67 0.944707
Target:  5'- uUCGCCGUgGUCCuGC-CGc--CGCAGg -3'
miRNA:   3'- -AGUGGCAgCAGGcCGaGCuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 226402 0.67 0.944707
Target:  5'- gCGCCGggacccgucgCGUCCGcGuCUCcGGACGCGGg -3'
miRNA:   3'- aGUGGCa---------GCAGGC-C-GAGcUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 206558 0.67 0.944707
Target:  5'- aCACCGcCGg-CGGCcCGggGCGcCAGa -3'
miRNA:   3'- aGUGGCaGCagGCCGaGCuuUGC-GUC- -5'
9120 5' -55.4 NC_002512.2 + 121825 0.67 0.944707
Target:  5'- aUCGCCGUCGgCCGGa-CGggGgGgAGg -3'
miRNA:   3'- -AGUGGCAGCaGGCCgaGCuuUgCgUC- -5'
9120 5' -55.4 NC_002512.2 + 154216 0.67 0.944707
Target:  5'- cCAUCGUCGUcucucgcgcggCCGGCg-GAAACGUAu -3'
miRNA:   3'- aGUGGCAGCA-----------GGCCGagCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 111271 0.67 0.944275
Target:  5'- gCACCGUCGUCuccauguCGGC-CGc--CGCGGg -3'
miRNA:   3'- aGUGGCAGCAG-------GCCGaGCuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 70229 0.68 0.940291
Target:  5'- aCACCGgcUCGgugCCGGCgcucgucugCGAGAauCGCGGg -3'
miRNA:   3'- aGUGGC--AGCa--GGCCGa--------GCUUU--GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 39281 0.68 0.940291
Target:  5'- -gAUCGUCGagCCGGCU-GAucCGCAGg -3'
miRNA:   3'- agUGGCAGCa-GGCCGAgCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 84539 0.68 0.940291
Target:  5'- -aGCCGgCGUCgGGCggcgcggCGAGGCGCu- -3'
miRNA:   3'- agUGGCaGCAGgCCGa------GCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 105770 0.68 0.940291
Target:  5'- uUCGCCG-CGUuacCCGGCggaccCGGAaagGCGCGGc -3'
miRNA:   3'- -AGUGGCaGCA---GGCCGa----GCUU---UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 82937 0.68 0.939838
Target:  5'- cCGCCGUCGUCgcgcuucaCGGCcagcaggUCGcgGCGCAc -3'
miRNA:   3'- aGUGGCAGCAG--------GCCG-------AGCuuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 104276 0.68 0.939382
Target:  5'- cCGCCGgcgucuuucucgCGUCCGGCggCGGGAgGCu- -3'
miRNA:   3'- aGUGGCa-----------GCAGGCCGa-GCUUUgCGuc -5'
9120 5' -55.4 NC_002512.2 + 91056 0.68 0.935654
Target:  5'- cCGCCuGUCGUCCGcCUgGAGGuCGCAc -3'
miRNA:   3'- aGUGG-CAGCAGGCcGAgCUUU-GCGUc -5'
9120 5' -55.4 NC_002512.2 + 81633 0.68 0.935654
Target:  5'- gUCGCCa-CGUCCaGGCUCG--GCGCGu -3'
miRNA:   3'- -AGUGGcaGCAGG-CCGAGCuuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 25052 0.68 0.93129
Target:  5'- cCGCCGUCGUCCucccggacGGagccgccgcgccccCGGGACGCGGa -3'
miRNA:   3'- aGUGGCAGCAGG--------CCga------------GCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 108177 0.68 0.930794
Target:  5'- aUCACgGUCGccCCGGUggCGAGGCGUu- -3'
miRNA:   3'- -AGUGgCAGCa-GGCCGa-GCUUUGCGuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.