miRNA display CGI


Results 61 - 80 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 82277 0.67 0.960203
Target:  5'- cCcCCGUCGagggUCGGgUCGAGGCGaCGGg -3'
miRNA:   3'- aGuGGCAGCa---GGCCgAGCUUUGC-GUC- -5'
9120 5' -55.4 NC_002512.2 + 217900 0.67 0.960203
Target:  5'- gCGUCGUCGagCGGCgguaCGAGACGguGg -3'
miRNA:   3'- aGUGGCAGCagGCCGa---GCUUUGCguC- -5'
9120 5' -55.4 NC_002512.2 + 151229 0.67 0.960203
Target:  5'- gCcCCGgCG-CCGGCUCGAccGACGCc- -3'
miRNA:   3'- aGuGGCaGCaGGCCGAGCU--UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 157304 0.67 0.959159
Target:  5'- gCAUCGaUGUCCGGUUCGuccguuaucguuucGGACGUGGg -3'
miRNA:   3'- aGUGGCaGCAGGCCGAGC--------------UUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 100221 0.67 0.956648
Target:  5'- aCGCCGUCGaggCGGCgUCGAcGgGCGGc -3'
miRNA:   3'- aGUGGCAGCag-GCCG-AGCUuUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 77086 0.67 0.956648
Target:  5'- cCGCCGUCGcCgCGGaccucCGAGACGgAGg -3'
miRNA:   3'- aGUGGCAGCaG-GCCga---GCUUUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 126160 0.67 0.956648
Target:  5'- aUCGCCG-CgGUCCGGUUCaGGaucAugGCGGc -3'
miRNA:   3'- -AGUGGCaG-CAGGCCGAG-CU---UugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 65253 0.67 0.956648
Target:  5'- aUCGCCGccugcCGUCCGGacucCUCGAGAuccUGCAa -3'
miRNA:   3'- -AGUGGCa----GCAGGCC----GAGCUUU---GCGUc -5'
9120 5' -55.4 NC_002512.2 + 36762 0.67 0.956648
Target:  5'- -gACCGUgaCGUCgGGC-CG-GACGCAGc -3'
miRNA:   3'- agUGGCA--GCAGgCCGaGCuUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 76402 0.67 0.956281
Target:  5'- aCGCCGUCc-CCGGaCUgGAcgacgguAACGCAGa -3'
miRNA:   3'- aGUGGCAGcaGGCC-GAgCU-------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 96164 0.67 0.955541
Target:  5'- gUCGCUGUCGgugucgaccgaccgUCCGGUggucCGGGAgGCGGc -3'
miRNA:   3'- -AGUGGCAGC--------------AGGCCGa---GCUUUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 134753 0.67 0.952883
Target:  5'- cCGCCGgggcggacCGUCCGGUUCGu--CgGCGGg -3'
miRNA:   3'- aGUGGCa-------GCAGGCCGAGCuuuG-CGUC- -5'
9120 5' -55.4 NC_002512.2 + 133149 0.67 0.952883
Target:  5'- cCGCuCGcUCGUCCGGUUCc---CGCGGg -3'
miRNA:   3'- aGUG-GC-AGCAGGCCGAGcuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 213005 0.67 0.952883
Target:  5'- -gGCCGUCGggcCCGGggcccuCUCGAggUGCGu -3'
miRNA:   3'- agUGGCAGCa--GGCC------GAGCUuuGCGUc -5'
9120 5' -55.4 NC_002512.2 + 6665 0.67 0.952883
Target:  5'- gCACCGag--CCGGC-CGGGACGCGc -3'
miRNA:   3'- aGUGGCagcaGGCCGaGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 184000 0.67 0.952883
Target:  5'- cUCcCCGUCGUCCGGUUagaGAAguucuACGUc- -3'
miRNA:   3'- -AGuGGCAGCAGGCCGAg--CUU-----UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 112579 0.67 0.950521
Target:  5'- cCGCCGUcCGUCCGGUgguagugCGGGAagucguucagguacgUGCGGa -3'
miRNA:   3'- aGUGGCA-GCAGGCCGa------GCUUU---------------GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 147524 0.67 0.948904
Target:  5'- cCGCCGaUC--CCGGCgCGAGGCGCGa -3'
miRNA:   3'- aGUGGC-AGcaGGCCGaGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 117742 0.67 0.948904
Target:  5'- cUCGCCGUCGaCCGcCUCGucuuCGCGc -3'
miRNA:   3'- -AGUGGCAGCaGGCcGAGCuuu-GCGUc -5'
9120 5' -55.4 NC_002512.2 + 79963 0.67 0.948904
Target:  5'- -uGCCGUCGgaagcggUCGGC-CGAGgagggcGCGCGGa -3'
miRNA:   3'- agUGGCAGCa------GGCCGaGCUU------UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.