Results 61 - 80 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 149874 | 0.67 | 0.960203 |
Target: 5'- aCGCC-UCGUCCGGCUcCGGcugcCGCu- -3' miRNA: 3'- aGUGGcAGCAGGCCGA-GCUuu--GCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 129443 | 0.67 | 0.960203 |
Target: 5'- uUCGCCGUCGcCCGGaagaccugCGAGGCccuCGGa -3' miRNA: 3'- -AGUGGCAGCaGGCCga------GCUUUGc--GUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 82277 | 0.67 | 0.960203 |
Target: 5'- cCcCCGUCGagggUCGGgUCGAGGCGaCGGg -3' miRNA: 3'- aGuGGCAGCa---GGCCgAGCUUUGC-GUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 157304 | 0.67 | 0.959159 |
Target: 5'- gCAUCGaUGUCCGGUUCGuccguuaucguuucGGACGUGGg -3' miRNA: 3'- aGUGGCaGCAGGCCGAGC--------------UUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 126160 | 0.67 | 0.956648 |
Target: 5'- aUCGCCG-CgGUCCGGUUCaGGaucAugGCGGc -3' miRNA: 3'- -AGUGGCaG-CAGGCCGAG-CU---UugCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 65253 | 0.67 | 0.956648 |
Target: 5'- aUCGCCGccugcCGUCCGGacucCUCGAGAuccUGCAa -3' miRNA: 3'- -AGUGGCa----GCAGGCC----GAGCUUU---GCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 100221 | 0.67 | 0.956648 |
Target: 5'- aCGCCGUCGaggCGGCgUCGAcGgGCGGc -3' miRNA: 3'- aGUGGCAGCag-GCCG-AGCUuUgCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 36762 | 0.67 | 0.956648 |
Target: 5'- -gACCGUgaCGUCgGGC-CG-GACGCAGc -3' miRNA: 3'- agUGGCA--GCAGgCCGaGCuUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 134753 | 0.67 | 0.952883 |
Target: 5'- cCGCCGgggcggacCGUCCGGUUCGu--CgGCGGg -3' miRNA: 3'- aGUGGCa-------GCAGGCCGAGCuuuG-CGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 151229 | 0.67 | 0.960203 |
Target: 5'- gCcCCGgCG-CCGGCUCGAccGACGCc- -3' miRNA: 3'- aGuGGCaGCaGGCCGAGCU--UUGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 6665 | 0.67 | 0.952883 |
Target: 5'- gCACCGag--CCGGC-CGGGACGCGc -3' miRNA: 3'- aGUGGCagcaGGCCGaGCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 112579 | 0.67 | 0.950521 |
Target: 5'- cCGCCGUcCGUCCGGUgguagugCGGGAagucguucagguacgUGCGGa -3' miRNA: 3'- aGUGGCA-GCAGGCCGa------GCUUU---------------GCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 147524 | 0.67 | 0.948904 |
Target: 5'- cCGCCGaUC--CCGGCgCGAGGCGCGa -3' miRNA: 3'- aGUGGC-AGcaGGCCGaGCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 117742 | 0.67 | 0.948904 |
Target: 5'- cUCGCCGUCGaCCGcCUCGucuuCGCGc -3' miRNA: 3'- -AGUGGCAGCaGGCcGAGCuuu-GCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 47221 | 0.67 | 0.948904 |
Target: 5'- -aACCGcaucaaggaGUUCGGCgaggcCGAGACGCAGg -3' miRNA: 3'- agUGGCag-------CAGGCCGa----GCUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 79963 | 0.67 | 0.948904 |
Target: 5'- -uGCCGUCGgaagcggUCGGC-CGAGgagggcGCGCGGa -3' miRNA: 3'- agUGGCAGCa------GGCCGaGCUU------UGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 154216 | 0.67 | 0.944707 |
Target: 5'- cCAUCGUCGUcucucgcgcggCCGGCg-GAAACGUAu -3' miRNA: 3'- aGUGGCAGCA-----------GGCCGagCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 121825 | 0.67 | 0.944707 |
Target: 5'- aUCGCCGUCGgCCGGa-CGggGgGgAGg -3' miRNA: 3'- -AGUGGCAGCaGGCCgaGCuuUgCgUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 111271 | 0.67 | 0.944275 |
Target: 5'- gCACCGUCGUCuccauguCGGC-CGc--CGCGGg -3' miRNA: 3'- aGUGGCAGCAG-------GCCGaGCuuuGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 77086 | 0.67 | 0.956648 |
Target: 5'- cCGCCGUCGcCgCGGaccucCGAGACGgAGg -3' miRNA: 3'- aGUGGCAGCaG-GCCga---GCUUUGCgUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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