miRNA display CGI


Results 61 - 80 of 183 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 104935 0.68 0.914875
Target:  5'- -gGCCuccUCGUCCGGCgUCG--GCGCGGc -3'
miRNA:   3'- agUGGc--AGCAGGCCG-AGCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 17964 0.68 0.914875
Target:  5'- cUC-CCGUCGgggucCCGacGCUCGAcGACGCGGc -3'
miRNA:   3'- -AGuGGCAGCa----GGC--CGAGCU-UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 75147 0.68 0.914875
Target:  5'- aCGCCGUCGgacgCGGC-CGcGGACGCAa -3'
miRNA:   3'- aGUGGCAGCag--GCCGaGC-UUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 146079 0.68 0.914875
Target:  5'- cCGCCGcCG-CCGGCgCGcccGACGCGGu -3'
miRNA:   3'- aGUGGCaGCaGGCCGaGCu--UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 135251 0.68 0.914875
Target:  5'- -gGCCGUCGUCCGcgccgcGCUCGAcGAgGCc- -3'
miRNA:   3'- agUGGCAGCAGGC------CGAGCU-UUgCGuc -5'
9120 5' -55.4 NC_002512.2 + 4868 0.68 0.920404
Target:  5'- uUCGCCGcgugCGgcgCCGGCUgGAGGaGCGGc -3'
miRNA:   3'- -AGUGGCa---GCa--GGCCGAgCUUUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 216218 0.68 0.920404
Target:  5'- gUCGCC-UCGUCCGggaGCUgGAGcCGCGGc -3'
miRNA:   3'- -AGUGGcAGCAGGC---CGAgCUUuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 174348 0.68 0.920404
Target:  5'- gCGCCcUCGUCC-GC-CGGGAUGCGGa -3'
miRNA:   3'- aGUGGcAGCAGGcCGaGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 105018 0.68 0.920404
Target:  5'- cCGCCGcccgguucUCGUCCGGgucCUCGu--CGCGGg -3'
miRNA:   3'- aGUGGC--------AGCAGGCC---GAGCuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 133858 0.68 0.920404
Target:  5'- aCACCGaggaCGUCCuggggcGGCUCGAGGaGCGGc -3'
miRNA:   3'- aGUGGCa---GCAGG------CCGAGCUUUgCGUC- -5'
9120 5' -55.4 NC_002512.2 + 43011 0.68 0.920404
Target:  5'- gCugCGguccgaggCGUUgGGCaggUCGAGGCGCAGg -3'
miRNA:   3'- aGugGCa-------GCAGgCCG---AGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 103437 0.68 0.925711
Target:  5'- -aACgCGUCGUcCCGGUcCGA-GCGCGGg -3'
miRNA:   3'- agUG-GCAGCA-GGCCGaGCUuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 119953 0.68 0.925711
Target:  5'- aUCGCCGUC-UCCGaGCUCucca-GCAGg -3'
miRNA:   3'- -AGUGGCAGcAGGC-CGAGcuuugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 1670 0.68 0.925711
Target:  5'- cCGCCGucUCGcCCGGCcUCGAc-CGCGGc -3'
miRNA:   3'- aGUGGC--AGCaGGCCG-AGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 117624 0.68 0.925711
Target:  5'- gCACCG-CGUcuucaCCGuGCUCGAGACGaGGa -3'
miRNA:   3'- aGUGGCaGCA-----GGC-CGAGCUUUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 1858 0.68 0.925711
Target:  5'- cUCGCCGcCGUCCGGUcgccccUCGuccCGCGu -3'
miRNA:   3'- -AGUGGCaGCAGGCCG------AGCuuuGCGUc -5'
9120 5' -55.4 NC_002512.2 + 108177 0.68 0.930794
Target:  5'- aUCACgGUCGccCCGGUggCGAGGCGUu- -3'
miRNA:   3'- -AGUGgCAGCa-GGCCGa-GCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 196159 0.68 0.930794
Target:  5'- uUCACCGgCGUCCGGaucCGcaAGACGCu- -3'
miRNA:   3'- -AGUGGCaGCAGGCCga-GC--UUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 130623 0.68 0.930794
Target:  5'- aCcCCG-CGUCCGGCguccUCGggGCGUc- -3'
miRNA:   3'- aGuGGCaGCAGGCCG----AGCuuUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 67640 0.68 0.930794
Target:  5'- aCACgGUCGUCCacgGGCcccCG-GACGCGGg -3'
miRNA:   3'- aGUGgCAGCAGG---CCGa--GCuUUGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.