miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 196264 0.7 0.862847
Target:  5'- gUCACCG--GUCgCGGCg-GAAGCGCGGa -3'
miRNA:   3'- -AGUGGCagCAG-GCCGagCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 188916 0.7 0.870078
Target:  5'- gCGCgGUCGgagagucCCGGUggCGggGCGCGGc -3'
miRNA:   3'- aGUGgCAGCa------GGCCGa-GCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 227059 0.7 0.870078
Target:  5'- cCGCCGUCGUCCGGgCccgCGcccGCGcCGGg -3'
miRNA:   3'- aGUGGCAGCAGGCC-Ga--GCuu-UGC-GUC- -5'
9120 5' -55.4 NC_002512.2 + 91481 0.7 0.870078
Target:  5'- gUACUugGUgGcCCgcGGCUCGAAGCGCAGg -3'
miRNA:   3'- aGUGG--CAgCaGG--CCGAGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 12312 0.7 0.876415
Target:  5'- gCGCCGcCGgaCCGGCUCGccgucgcGAACGCGa -3'
miRNA:   3'- aGUGGCaGCa-GGCCGAGC-------UUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 72874 0.7 0.877109
Target:  5'- gUCGCCGUUGUCgcggGGCUCGGGcccgaaGCGGc -3'
miRNA:   3'- -AGUGGCAGCAGg---CCGAGCUUug----CGUC- -5'
9120 5' -55.4 NC_002512.2 + 2270 0.7 0.877109
Target:  5'- cUCGCCGcCGccgcccgcccUCCGGCcgcugCGGGugGCGGg -3'
miRNA:   3'- -AGUGGCaGC----------AGGCCGa----GCUUugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 143220 0.7 0.877109
Target:  5'- cUCGCgCGcCGUCC-GCUCG-GACGCGGc -3'
miRNA:   3'- -AGUG-GCaGCAGGcCGAGCuUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 70786 0.69 0.883936
Target:  5'- aUC-CCGUCGUCCucgucGC-CGuuGCGCAGg -3'
miRNA:   3'- -AGuGGCAGCAGGc----CGaGCuuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 154621 0.69 0.883936
Target:  5'- cCGCCGUCG-CCgccaucgugGGgaCGGGACGCGGc -3'
miRNA:   3'- aGUGGCAGCaGG---------CCgaGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 148039 0.69 0.896329
Target:  5'- cCGCCGaCGcuccccgacccggUCCGGCagaUCGAGACGCGc -3'
miRNA:   3'- aGUGGCaGC-------------AGGCCG---AGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 95733 0.69 0.89696
Target:  5'- cUCcCCGUCcccgCCGGC-CGGGACGCGc -3'
miRNA:   3'- -AGuGGCAGca--GGCCGaGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 123524 0.69 0.89696
Target:  5'- uUCcUCGUCGUCUGGUacuccgagUCGGcgGGCGCGGa -3'
miRNA:   3'- -AGuGGCAGCAGGCCG--------AGCU--UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 95095 0.69 0.903151
Target:  5'- -gACCGgCGUCgGGCcCGggGaCGCGGg -3'
miRNA:   3'- agUGGCaGCAGgCCGaGCuuU-GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 30422 0.69 0.903151
Target:  5'- aCGCgggCGUCGUCgCGGCcCuGAACGCGGg -3'
miRNA:   3'- aGUG---GCAGCAG-GCCGaGcUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 79217 0.69 0.903151
Target:  5'- cCGCCG-CGcCCgcggaccucgaGGCUCGAGcuGCGCAGc -3'
miRNA:   3'- aGUGGCaGCaGG-----------CCGAGCUU--UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 103451 0.69 0.903151
Target:  5'- cCGCCGUCG-CCGGC-CGG---GCGGg -3'
miRNA:   3'- aGUGGCAGCaGGCCGaGCUuugCGUC- -5'
9120 5' -55.4 NC_002512.2 + 179297 0.69 0.903151
Target:  5'- gCACCGUCcaGUCCgcgGGCggCGAGGCggGCAGa -3'
miRNA:   3'- aGUGGCAG--CAGG---CCGa-GCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 121361 0.69 0.909123
Target:  5'- cCGCCGUCGgguccCCGGC-CGGucgGGCGcCGGg -3'
miRNA:   3'- aGUGGCAGCa----GGCCGaGCU---UUGC-GUC- -5'
9120 5' -55.4 NC_002512.2 + 83183 0.68 0.91431
Target:  5'- cCGCCGUCGucuccgucgcccgUCCGcGCgCGggGCGgGGg -3'
miRNA:   3'- aGUGGCAGC-------------AGGC-CGaGCuuUGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.