miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 189273 0.66 0.969649
Target:  5'- aCGUCGagGUCCGGcCUCGcgGCGCGu -3'
miRNA:   3'- aGUGGCagCAGGCC-GAGCuuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 102633 0.66 0.966699
Target:  5'- aCGCCGUCGccguUCCGGC-CGu--CGCc- -3'
miRNA:   3'- aGUGGCAGC----AGGCCGaGCuuuGCGuc -5'
9120 5' -55.4 NC_002512.2 + 192407 0.66 0.966699
Target:  5'- uUUACCGUccuuccgacgCGUCCGGuCUCGuucuuccccCGCGGg -3'
miRNA:   3'- -AGUGGCA----------GCAGGCC-GAGCuuu------GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 158676 0.66 0.966699
Target:  5'- aUCGCCGgaucauggCCGGC-CGGGACGgGGa -3'
miRNA:   3'- -AGUGGCagca----GGCCGaGCUUUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 221457 0.66 0.966699
Target:  5'- gCGCgGUCGUccgaCCGGCcgCGguGCGCGu -3'
miRNA:   3'- aGUGgCAGCA----GGCCGa-GCuuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 100318 0.66 0.966699
Target:  5'- -gGCCGaCGUcCCGGCgccUCGGGACugGCGGg -3'
miRNA:   3'- agUGGCaGCA-GGCCG---AGCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 106759 0.66 0.966699
Target:  5'- gCuCCG-CGUCCGGCucUCGGccCGCGGc -3'
miRNA:   3'- aGuGGCaGCAGGCCG--AGCUuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 123455 0.66 0.966699
Target:  5'- -gACCGcUgGUUCGGgUCGGAcaACGCGGu -3'
miRNA:   3'- agUGGC-AgCAGGCCgAGCUU--UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 3162 0.66 0.966393
Target:  5'- cCGCCGUCGUcgcccgcggccucCCGucGCUCGAcgccgcCGCGGg -3'
miRNA:   3'- aGUGGCAGCA-------------GGC--CGAGCUuu----GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 227862 0.66 0.966085
Target:  5'- -uGCUGUCGcuccuccuggugCCGGCUCaGGcGACGCGGg -3'
miRNA:   3'- agUGGCAGCa-----------GGCCGAG-CU-UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 124760 0.66 0.963552
Target:  5'- -aGCCGUCGU-CGGCccagaCGAccGCGCAGu -3'
miRNA:   3'- agUGGCAGCAgGCCGa----GCUu-UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 215057 0.66 0.963552
Target:  5'- cUCACCGUCGUC-GGCggCGucuacCGCGu -3'
miRNA:   3'- -AGUGGCAGCAGgCCGa-GCuuu--GCGUc -5'
9120 5' -55.4 NC_002512.2 + 218970 0.66 0.963552
Target:  5'- gUCGCCGgcugggagGUCCGGCcCGggGucCGCAa -3'
miRNA:   3'- -AGUGGCag------CAGGCCGaGCuuU--GCGUc -5'
9120 5' -55.4 NC_002512.2 + 114013 0.66 0.963552
Target:  5'- --gUCGUCGUCCGGCgggcccgccUCGGcgAACGCc- -3'
miRNA:   3'- aguGGCAGCAGGCCG---------AGCU--UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 84506 0.66 0.963552
Target:  5'- aCGCCG-CGUCgGGCUCccaguCGUAGc -3'
miRNA:   3'- aGUGGCaGCAGgCCGAGcuuu-GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 120046 0.66 0.963552
Target:  5'- aCGCCGguccccgaCGcCCGGCgguUCGAcgugAACGCGGg -3'
miRNA:   3'- aGUGGCa-------GCaGGCCG---AGCU----UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 134877 0.66 0.963552
Target:  5'- aCGCCGUCGgggaCCuggacuGCUCGGAcGCGCAc -3'
miRNA:   3'- aGUGGCAGCa---GGc-----CGAGCUU-UGCGUc -5'
9120 5' -55.4 NC_002512.2 + 126103 0.66 0.963226
Target:  5'- aUCACCGaggucggccggugUCG-CCGGUUCGAGAucuccuCGUAGc -3'
miRNA:   3'- -AGUGGC-------------AGCaGGCCGAGCUUU------GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 129443 0.67 0.960203
Target:  5'- uUCGCCGUCGcCCGGaagaccugCGAGGCccuCGGa -3'
miRNA:   3'- -AGUGGCAGCaGGCCga------GCUUUGc--GUC- -5'
9120 5' -55.4 NC_002512.2 + 82277 0.67 0.960203
Target:  5'- cCcCCGUCGagggUCGGgUCGAGGCGaCGGg -3'
miRNA:   3'- aGuGGCAGCa---GGCCgAGCUUUGC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.