miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 77086 0.67 0.956648
Target:  5'- cCGCCGUCGcCgCGGaccucCGAGACGgAGg -3'
miRNA:   3'- aGUGGCAGCaG-GCCga---GCUUUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 77687 0.66 0.974227
Target:  5'- gUCGacaCGUCGUCCGGacgcggucaagugaaCGAGACGCc- -3'
miRNA:   3'- -AGUg--GCAGCAGGCCga-------------GCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 78389 0.66 0.974731
Target:  5'- -aACCG-CGaggCCGGCUgGAgaucgagAGCGCGGg -3'
miRNA:   3'- agUGGCaGCa--GGCCGAgCU-------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 78953 0.71 0.807124
Target:  5'- cCGCCGgagccuaaGUCCGGCUCGGAcuuaGCGUc- -3'
miRNA:   3'- aGUGGCag------CAGGCCGAGCUU----UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 79217 0.69 0.903151
Target:  5'- cCGCCG-CGcCCgcggaccucgaGGCUCGAGcuGCGCAGc -3'
miRNA:   3'- aGUGGCaGCaGG-----------CCGAGCUU--UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 79963 0.67 0.948904
Target:  5'- -uGCCGUCGgaagcggUCGGC-CGAGgagggcGCGCGGa -3'
miRNA:   3'- agUGGCAGCa------GGCCGaGCUU------UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 81423 0.66 0.97498
Target:  5'- cCGCCGUCG--CGGCUcCGuccCGCGGg -3'
miRNA:   3'- aGUGGCAGCagGCCGA-GCuuuGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 81633 0.68 0.935654
Target:  5'- gUCGCCa-CGUCCaGGCUCG--GCGCGu -3'
miRNA:   3'- -AGUGGcaGCAGG-CCGAGCuuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 82020 0.74 0.686542
Target:  5'- -aGCCGUCGcCCGGgUCGggGuCGCGc -3'
miRNA:   3'- agUGGCAGCaGGCCgAGCuuU-GCGUc -5'
9120 5' -55.4 NC_002512.2 + 82197 0.7 0.84001
Target:  5'- cCGCCGUCGggCCGGCguccuccCGggGCGgGa -3'
miRNA:   3'- aGUGGCAGCa-GGCCGa------GCuuUGCgUc -5'
9120 5' -55.4 NC_002512.2 + 82277 0.67 0.960203
Target:  5'- cCcCCGUCGagggUCGGgUCGAGGCGaCGGg -3'
miRNA:   3'- aGuGGCAGCa---GGCCgAGCUUUGC-GUC- -5'
9120 5' -55.4 NC_002512.2 + 82937 0.68 0.939838
Target:  5'- cCGCCGUCGUCgcgcuucaCGGCcagcaggUCGcgGCGCAc -3'
miRNA:   3'- aGUGGCAGCAG--------GCCG-------AGCuuUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 83183 0.68 0.91431
Target:  5'- cCGCCGUCGucuccgucgcccgUCCGcGCgCGggGCGgGGg -3'
miRNA:   3'- aGUGGCAGC-------------AGGC-CGaGCuuUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 84340 0.7 0.847807
Target:  5'- gUCGCCGcguccUCGagcgggaugcUCCGGCcCGAcGCGCAGa -3'
miRNA:   3'- -AGUGGC-----AGC----------AGGCCGaGCUuUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 84506 0.66 0.963552
Target:  5'- aCGCCG-CGUCgGGCUCccaguCGUAGc -3'
miRNA:   3'- aGUGGCaGCAGgCCGAGcuuu-GCGUC- -5'
9120 5' -55.4 NC_002512.2 + 84539 0.68 0.940291
Target:  5'- -aGCCGgCGUCgGGCggcgcggCGAGGCGCu- -3'
miRNA:   3'- agUGGCaGCAGgCCGa------GCUUUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 88604 0.66 0.972407
Target:  5'- cCGCCGUgCGcgcggCCGGCgUCGGGACGa-- -3'
miRNA:   3'- aGUGGCA-GCa----GGCCG-AGCUUUGCguc -5'
9120 5' -55.4 NC_002512.2 + 90482 0.66 0.97214
Target:  5'- aUCACCGgggCGUCCucgacgggaucggGGC-CGAGGCcgGCGGc -3'
miRNA:   3'- -AGUGGCa--GCAGG-------------CCGaGCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 91056 0.68 0.935654
Target:  5'- cCGCCuGUCGUCCGcCUgGAGGuCGCAc -3'
miRNA:   3'- aGUGG-CAGCAGGCcGAgCUUU-GCGUc -5'
9120 5' -55.4 NC_002512.2 + 91481 0.7 0.870078
Target:  5'- gUACUugGUgGcCCgcGGCUCGAAGCGCAGg -3'
miRNA:   3'- aGUGG--CAgCaGG--CCGAGCUUUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.