Results 41 - 60 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9120 | 5' | -55.4 | NC_002512.2 | + | 172348 | 0.72 | 0.789762 |
Target: 5'- ---aCGUCGUCCGGUguaUGGAACGCGu -3' miRNA: 3'- agugGCAGCAGGCCGa--GCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 172014 | 0.66 | 0.969649 |
Target: 5'- cCGCCGUCGccuggUCCGGC-CGGcagcauGCGCc- -3' miRNA: 3'- aGUGGCAGC-----AGGCCGaGCUu-----UGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 158676 | 0.66 | 0.966699 |
Target: 5'- aUCGCCGgaucauggCCGGC-CGGGACGgGGa -3' miRNA: 3'- -AGUGGCagca----GGCCGaGCUUUGCgUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 158314 | 0.76 | 0.558585 |
Target: 5'- cCGCgGUCGUCCGGCgCGAGuccGCGCu- -3' miRNA: 3'- aGUGgCAGCAGGCCGaGCUU---UGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 157304 | 0.67 | 0.959159 |
Target: 5'- gCAUCGaUGUCCGGUUCGuccguuaucguuucGGACGUGGg -3' miRNA: 3'- aGUGGCaGCAGGCCGAGC--------------UUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 156537 | 0.72 | 0.75351 |
Target: 5'- cCugCGaCG-CCGGUUCGGAGCGCGu -3' miRNA: 3'- aGugGCaGCaGGCCGAGCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 156527 | 0.66 | 0.977373 |
Target: 5'- gCGCgGggGUCCGGCggCGGgaacguguacgcGACGCGGg -3' miRNA: 3'- aGUGgCagCAGGCCGa-GCU------------UUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 156327 | 0.66 | 0.97498 |
Target: 5'- -aGCuCGUCGagCGGCUgCGGGACcuGCAGa -3' miRNA: 3'- agUG-GCAGCagGCCGA-GCUUUG--CGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 155964 | 0.66 | 0.977373 |
Target: 5'- -gGCCGUCGcguuucUCCGacagcGCUUGGAccGCGCGGu -3' miRNA: 3'- agUGGCAGC------AGGC-----CGAGCUU--UGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 154683 | 0.7 | 0.845487 |
Target: 5'- -gACCGUccgcuccgagcggcCGUCCGGCgUCGAGcgGCGCGa -3' miRNA: 3'- agUGGCA--------------GCAGGCCG-AGCUU--UGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 154621 | 0.69 | 0.883936 |
Target: 5'- cCGCCGUCG-CCgccaucgugGGgaCGGGACGCGGc -3' miRNA: 3'- aGUGGCAGCaGG---------CCgaGCUUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 154216 | 0.67 | 0.944707 |
Target: 5'- cCAUCGUCGUcucucgcgcggCCGGCg-GAAACGUAu -3' miRNA: 3'- aGUGGCAGCA-----------GGCCGagCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 152276 | 0.72 | 0.771869 |
Target: 5'- gUCGCuCGUCGuUCCGGCggCGAucCGCGa -3' miRNA: 3'- -AGUG-GCAGC-AGGCCGa-GCUuuGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 151229 | 0.67 | 0.960203 |
Target: 5'- gCcCCGgCG-CCGGCUCGAccGACGCc- -3' miRNA: 3'- aGuGGCaGCaGGCCGAGCU--UUGCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 149874 | 0.67 | 0.960203 |
Target: 5'- aCGCC-UCGUCCGGCUcCGGcugcCGCu- -3' miRNA: 3'- aGUGGcAGCAGGCCGA-GCUuu--GCGuc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 148039 | 0.69 | 0.896329 |
Target: 5'- cCGCCGaCGcuccccgacccggUCCGGCagaUCGAGACGCGc -3' miRNA: 3'- aGUGGCaGC-------------AGGCCG---AGCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 147524 | 0.67 | 0.948904 |
Target: 5'- cCGCCGaUC--CCGGCgCGAGGCGCGa -3' miRNA: 3'- aGUGGC-AGcaGGCCGaGCUUUGCGUc -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 146079 | 0.68 | 0.914875 |
Target: 5'- cCGCCGcCG-CCGGCgCGcccGACGCGGu -3' miRNA: 3'- aGUGGCaGCaGGCCGaGCu--UUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 143220 | 0.7 | 0.877109 |
Target: 5'- cUCGCgCGcCGUCC-GCUCG-GACGCGGc -3' miRNA: 3'- -AGUG-GCaGCAGGcCGAGCuUUGCGUC- -5' |
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9120 | 5' | -55.4 | NC_002512.2 | + | 135251 | 0.68 | 0.914875 |
Target: 5'- -gGCCGUCGUCCGcgccgcGCUCGAcGAgGCc- -3' miRNA: 3'- agUGGCAGCAGGC------CGAGCU-UUgCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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