miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9120 5' -55.4 NC_002512.2 + 172348 0.72 0.789762
Target:  5'- ---aCGUCGUCCGGUguaUGGAACGCGu -3'
miRNA:   3'- agugGCAGCAGGCCGa--GCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 172014 0.66 0.969649
Target:  5'- cCGCCGUCGccuggUCCGGC-CGGcagcauGCGCc- -3'
miRNA:   3'- aGUGGCAGC-----AGGCCGaGCUu-----UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 158676 0.66 0.966699
Target:  5'- aUCGCCGgaucauggCCGGC-CGGGACGgGGa -3'
miRNA:   3'- -AGUGGCagca----GGCCGaGCUUUGCgUC- -5'
9120 5' -55.4 NC_002512.2 + 158314 0.76 0.558585
Target:  5'- cCGCgGUCGUCCGGCgCGAGuccGCGCu- -3'
miRNA:   3'- aGUGgCAGCAGGCCGaGCUU---UGCGuc -5'
9120 5' -55.4 NC_002512.2 + 157304 0.67 0.959159
Target:  5'- gCAUCGaUGUCCGGUUCGuccguuaucguuucGGACGUGGg -3'
miRNA:   3'- aGUGGCaGCAGGCCGAGC--------------UUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 156537 0.72 0.75351
Target:  5'- cCugCGaCG-CCGGUUCGGAGCGCGu -3'
miRNA:   3'- aGugGCaGCaGGCCGAGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 156527 0.66 0.977373
Target:  5'- gCGCgGggGUCCGGCggCGGgaacguguacgcGACGCGGg -3'
miRNA:   3'- aGUGgCagCAGGCCGa-GCU------------UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 156327 0.66 0.97498
Target:  5'- -aGCuCGUCGagCGGCUgCGGGACcuGCAGa -3'
miRNA:   3'- agUG-GCAGCagGCCGA-GCUUUG--CGUC- -5'
9120 5' -55.4 NC_002512.2 + 155964 0.66 0.977373
Target:  5'- -gGCCGUCGcguuucUCCGacagcGCUUGGAccGCGCGGu -3'
miRNA:   3'- agUGGCAGC------AGGC-----CGAGCUU--UGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 154683 0.7 0.845487
Target:  5'- -gACCGUccgcuccgagcggcCGUCCGGCgUCGAGcgGCGCGa -3'
miRNA:   3'- agUGGCA--------------GCAGGCCG-AGCUU--UGCGUc -5'
9120 5' -55.4 NC_002512.2 + 154621 0.69 0.883936
Target:  5'- cCGCCGUCG-CCgccaucgugGGgaCGGGACGCGGc -3'
miRNA:   3'- aGUGGCAGCaGG---------CCgaGCUUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 154216 0.67 0.944707
Target:  5'- cCAUCGUCGUcucucgcgcggCCGGCg-GAAACGUAu -3'
miRNA:   3'- aGUGGCAGCA-----------GGCCGagCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 152276 0.72 0.771869
Target:  5'- gUCGCuCGUCGuUCCGGCggCGAucCGCGa -3'
miRNA:   3'- -AGUG-GCAGC-AGGCCGa-GCUuuGCGUc -5'
9120 5' -55.4 NC_002512.2 + 151229 0.67 0.960203
Target:  5'- gCcCCGgCG-CCGGCUCGAccGACGCc- -3'
miRNA:   3'- aGuGGCaGCaGGCCGAGCU--UUGCGuc -5'
9120 5' -55.4 NC_002512.2 + 149874 0.67 0.960203
Target:  5'- aCGCC-UCGUCCGGCUcCGGcugcCGCu- -3'
miRNA:   3'- aGUGGcAGCAGGCCGA-GCUuu--GCGuc -5'
9120 5' -55.4 NC_002512.2 + 148039 0.69 0.896329
Target:  5'- cCGCCGaCGcuccccgacccggUCCGGCagaUCGAGACGCGc -3'
miRNA:   3'- aGUGGCaGC-------------AGGCCG---AGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 147524 0.67 0.948904
Target:  5'- cCGCCGaUC--CCGGCgCGAGGCGCGa -3'
miRNA:   3'- aGUGGC-AGcaGGCCGaGCUUUGCGUc -5'
9120 5' -55.4 NC_002512.2 + 146079 0.68 0.914875
Target:  5'- cCGCCGcCG-CCGGCgCGcccGACGCGGu -3'
miRNA:   3'- aGUGGCaGCaGGCCGaGCu--UUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 143220 0.7 0.877109
Target:  5'- cUCGCgCGcCGUCC-GCUCG-GACGCGGc -3'
miRNA:   3'- -AGUG-GCaGCAGGcCGAGCuUUGCGUC- -5'
9120 5' -55.4 NC_002512.2 + 135251 0.68 0.914875
Target:  5'- -gGCCGUCGUCCGcgccgcGCUCGAcGAgGCc- -3'
miRNA:   3'- agUGGCAGCAGGC------CGAGCU-UUgCGuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.